Strain Fitness in Sinorhizobium meliloti 1021 around SMc04040

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04038 and SMc04039 are separated by 57 nucleotidesSMc04039 and SMc04040 are separated by 292 nucleotidesSMc04040 and SMc04041 are separated by 374 nucleotides SMc04038: SMc04038 - partial transposase for ISRM17 protein, at 3,042,309 to 3,043,061 SMc04038 SMc04039: SMc04039 - partial transposase for ISRM17 protein, at 3,043,119 to 3,043,643 SMc04039 SMc04040: SMc04040 - heat shock protein, at 3,043,936 to 3,044,397 SMc04040 SMc04041: SMc04041 - lysophospholipase L2 protein, at 3,044,772 to 3,045,755 SMc04041 Position (kb) 3043 3044 3045Strain fitness (log2 ratio) -1 0 1 2 3at 3044.123 kb on - strand, within SMc04040at 3044.294 kb on + strand, within SMc04040at 3045.075 kb on + strand, within SMc04041

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,044,123 - SMc04040 0.40 +1.2
3,044,294 + SMc04040 0.77 -0.1
3,045,075 + SMc04041 0.31 +3.7

Or see this region's nucleotide sequence