Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03849 and SMc03850 overlap by 4 nucleotides SMc03850 and SMc03851 overlap by 4 nucleotides SMc03851 and SMc03852 are separated by 158 nucleotides SMc03852 and SMc03853 overlap by 4 nucleotides SMc03853 and SMc03854 are separated by 97 nucleotides
SMc03849: SMc03849 - heme exporter C (cytochrome C-type biogenesis protein) transmembrane, at 3,515,202 to 3,515,972
SMc03849
SMc03850: SMc03850 - heme exporter D (cytochrome C-type biogenesis protein) transmembrane, at 3,515,969 to 3,516,145
SMc03850
SMc03851: SMc03851 - thiol:disulfide interchange protein (cytochrome C biogenesis protein), at 3,516,142 to 3,516,750
SMc03851
SMc03852: SMc03852 - hypothetical protein, at 3,516,909 to 3,517,502
SMc03852
SMc03853: SMc03853 - intracellular septation protein A, at 3,517,499 to 3,518,131
SMc03853
SMc03854: SMc03854 - cell division protein, at 3,518,229 to 3,519,875
SMc03854
Position (kb)
3516
3517
3518 Strain fitness (log2 ratio)
-2
-1
0
1 at 3515.963 kb on + strand at 3515.963 kb on + strand at 3515.987 kb on + strand, within SMc03850 at 3515.988 kb on - strand, within SMc03850 at 3516.511 kb on + strand, within SMc03851 at 3516.748 kb on + strand at 3516.994 kb on + strand, within SMc03852 at 3517.089 kb on - strand, within SMc03852 at 3517.151 kb on - strand, within SMc03852 at 3517.162 kb on - strand, within SMc03852 at 3517.200 kb on + strand, within SMc03852 at 3517.267 kb on + strand, within SMc03852 at 3517.303 kb on + strand, within SMc03852 at 3517.304 kb on - strand, within SMc03852 at 3517.328 kb on + strand, within SMc03852 at 3517.329 kb on - strand, within SMc03852 at 3517.366 kb on + strand, within SMc03852 at 3517.387 kb on - strand, within SMc03852 at 3518.191 kb on + strand at 3518.191 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 3,515,963 + -1.2 3,515,963 + -0.3 3,515,987 + SMc03850 0.10 -1.6 3,515,988 - SMc03850 0.11 +0.6 3,516,511 + SMc03851 0.61 -0.6 3,516,748 + +0.9 3,516,994 + SMc03852 0.14 -0.6 3,517,089 - SMc03852 0.30 -0.4 3,517,151 - SMc03852 0.41 -0.4 3,517,162 - SMc03852 0.43 +0.6 3,517,200 + SMc03852 0.49 -0.5 3,517,267 + SMc03852 0.60 -1.6 3,517,303 + SMc03852 0.66 -0.4 3,517,304 - SMc03852 0.66 -0.2 3,517,328 + SMc03852 0.71 -2.0 3,517,329 - SMc03852 0.71 +0.2 3,517,366 + SMc03852 0.77 +1.5 3,517,387 - SMc03852 0.80 -0.5 3,518,191 + -0.0 3,518,191 + -0.4
Or see this region's nucleotide sequence