Strain Fitness in Sinorhizobium meliloti 1021 around SMc03250

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03248 and SMc03249 overlap by 4 nucleotidesSMc03249 and SMc03751 are separated by 76 nucleotidesSMc03751 and SMc03250 overlap by 20 nucleotidesSMc03250 and SMc03251 are separated by 940 nucleotides SMc03248: SMc03248 - transposase, at 3,361,899 to 3,362,729 SMc03248 SMc03249: SMc03249 - hypothetical protein, at 3,362,726 to 3,362,983 SMc03249 SMc03751: SMc03751 - hypothetical protein, at 3,363,060 to 3,363,509 SMc03751 SMc03250: SMc03250 - hypothetical protein, at 3,363,490 to 3,363,951 SMc03250 SMc03251: SMc03251 - hypothetical protein, at 3,364,892 to 3,365,899 SMc03251 Position (kb) 3363 3364Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3362.654 kb on - strandat 3362.654 kb on - strandat 3362.814 kb on - strand, within SMc03249at 3362.814 kb on - strandat 3363.061 kb on + strandat 3363.061 kb on + strandat 3363.062 kb on - strandat 3363.062 kb on - strandat 3363.089 kb on + strandat 3363.090 kb on - strandat 3363.173 kb on + strand, within SMc03751at 3363.478 kb on + strandat 3363.511 kb on - strandat 3363.852 kb on + strand, within SMc03250at 3363.853 kb on - strand, within SMc03250at 3363.853 kb on - strand, within SMc03250at 3364.018 kb on + strandat 3364.019 kb on - strandat 3364.019 kb on - strandat 3364.166 kb on - strandat 3364.166 kb on - strandat 3364.335 kb on + strandat 3364.335 kb on + strandat 3364.391 kb on - strandat 3364.549 kb on + strandat 3364.550 kb on - strandat 3364.550 kb on - strandat 3364.553 kb on - strandat 3364.652 kb on + strandat 3364.653 kb on - strandat 3364.701 kb on + strandat 3364.866 kb on + strandat 3364.902 kb on + strandat 3364.903 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,362,654 - +0.1
3,362,654 - -0.2
3,362,814 - SMc03249 0.34 +0.7
3,362,814 - -0.7
3,363,061 + -0.7
3,363,061 + -3.2
3,363,062 - -0.4
3,363,062 - -0.8
3,363,089 + -2.1
3,363,090 - +0.0
3,363,173 + SMc03751 0.25 -0.2
3,363,478 + +0.6
3,363,511 - -0.4
3,363,852 + SMc03250 0.78 +1.1
3,363,853 - SMc03250 0.79 +0.4
3,363,853 - SMc03250 0.79 +1.1
3,364,018 + -1.6
3,364,019 - -0.3
3,364,019 - +1.8
3,364,166 - -0.8
3,364,166 - -1.8
3,364,335 + -0.7
3,364,335 + +0.2
3,364,391 - +0.1
3,364,549 + +0.1
3,364,550 - +2.7
3,364,550 - -0.4
3,364,553 - +0.3
3,364,652 + -3.2
3,364,653 - +1.0
3,364,701 + +1.5
3,364,866 + -1.5
3,364,902 + +0.1
3,364,903 - +0.5

Or see this region's nucleotide sequence