Strain Fitness in Sinorhizobium meliloti 1021 around SMc03125

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03127 and SMc03126 overlap by 4 nucleotidesSMc03126 and SMc03125 overlap by 4 nucleotidesSMc03125 and SMc03124 are separated by 93 nucleotides SMc03127: SMc03127 - ABC transporter permease, at 3,202,125 to 3,203,051 SMc03127 SMc03126: SMc03126 - transport system ATP-binding ABC transporter protein, at 3,203,048 to 3,204,046 SMc03126 SMc03125: SMc03125 - transport system ATP-binding ABC transporter protein, at 3,204,043 to 3,205,056 SMc03125 SMc03124: SMc03124 - periplasmic binding ABC transporter protein, at 3,205,150 to 3,206,778 SMc03124 Position (kb) 3204 3205 3206Strain fitness (log2 ratio) -2 -1 0 1 2at 3203.301 kb on + strand, within SMc03126at 3204.006 kb on + strandat 3204.707 kb on + strand, within SMc03125at 3205.141 kb on + strandat 3205.405 kb on - strand, within SMc03124at 3205.599 kb on - strand, within SMc03124at 3205.638 kb on - strand, within SMc03124at 3205.638 kb on - strand, within SMc03124at 3205.719 kb on - strand, within SMc03124at 3205.846 kb on + strand, within SMc03124

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,203,301 + SMc03126 0.25 +2.4
3,204,006 + -1.4
3,204,707 + SMc03125 0.65 -2.4
3,205,141 + +0.2
3,205,405 - SMc03124 0.16 -0.3
3,205,599 - SMc03124 0.28 +1.3
3,205,638 - SMc03124 0.30 -1.9
3,205,638 - SMc03124 0.30 +2.1
3,205,719 - SMc03124 0.35 +1.1
3,205,846 + SMc03124 0.43 -2.7

Or see this region's nucleotide sequence