Strain Fitness in Sinorhizobium meliloti 1021 around SMc02859

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02858 and SMc02859 are separated by 172 nucleotidesSMc02859 and SMc02860 are separated by 4 nucleotidesSMc02860 and SMc02861 are separated by 113 nucleotides SMc02858: SMc02858 - chaperone protein DnaJ, at 211,964 to 213,103 SMc02858 SMc02859: SMc02859 - hypothetical protein, at 213,276 to 214,160 SMc02859 SMc02860: SMc02860 - hypothetical protein, at 214,165 to 214,800 SMc02860 SMc02861: SMc02861 - phosphate transporter, at 214,914 to 215,918 SMc02861 Position (kb) 213 214 215Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 212.771 kb on + strand, within SMc02858at 213.470 kb on - strand, within SMc02859at 213.470 kb on - strand, within SMc02859at 213.633 kb on + strand, within SMc02859at 213.805 kb on + strand, within SMc02859at 213.971 kb on + strand, within SMc02859at 214.066 kb on + strand, within SMc02859at 214.384 kb on - strand, within SMc02860at 214.384 kb on - strand, within SMc02860at 214.616 kb on - strand, within SMc02860at 214.742 kb on + strandat 214.742 kb on + strandat 214.743 kb on - strandat 214.816 kb on + strandat 214.817 kb on - strandat 214.867 kb on + strandat 214.867 kb on + strandat 214.868 kb on - strandat 214.868 kb on - strandat 214.869 kb on + strandat 214.870 kb on - strandat 214.940 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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212,771 + SMc02858 0.71 -1.7
213,470 - SMc02859 0.22 -0.4
213,470 - SMc02859 0.22 -2.2
213,633 + SMc02859 0.40 +0.6
213,805 + SMc02859 0.60 +0.6
213,971 + SMc02859 0.79 +1.3
214,066 + SMc02859 0.89 +1.3
214,384 - SMc02860 0.34 -2.6
214,384 - SMc02860 0.34 -2.3
214,616 - SMc02860 0.71 +0.4
214,742 + +0.9
214,742 + -3.5
214,743 - +2.3
214,816 + -0.3
214,817 - -0.0
214,867 + +0.9
214,867 + -0.3
214,868 - -0.7
214,868 - -2.8
214,869 + +0.4
214,870 - +0.6
214,940 - +1.3

Or see this region's nucleotide sequence