Strain Fitness in Sinorhizobium meliloti 1021 around SMc01596

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01555 and SMc01596 are separated by 149 nucleotidesSMc01596 and SMc01556 are separated by 145 nucleotides SMc01555: SMc01555 - hypothetical protein, at 2,496,744 to 2,497,055 SMc01555 SMc01596: SMc01596 - tRNA-Met, at 2,497,205 to 2,497,280 SMc01596 SMc01556: SMc01556 - hypothetical protein, at 2,497,426 to 2,498,214 SMc01556 Position (kb) 2497 2498Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2496.206 kb on + strandat 2496.209 kb on + strandat 2496.209 kb on + strandat 2496.210 kb on - strandat 2496.232 kb on + strandat 2496.240 kb on + strandat 2496.241 kb on - strandat 2496.253 kb on + strandat 2496.253 kb on + strandat 2496.253 kb on + strandat 2496.254 kb on - strandat 2496.414 kb on - strandat 2496.500 kb on + strandat 2496.501 kb on - strandat 2496.521 kb on + strandat 2496.569 kb on + strandat 2496.570 kb on - strandat 2496.584 kb on + strandat 2496.585 kb on - strandat 2496.654 kb on + strandat 2496.717 kb on + strandat 2496.718 kb on - strandat 2496.718 kb on - strandat 2496.722 kb on + strandat 2496.723 kb on - strandat 2496.723 kb on - strandat 2496.723 kb on - strandat 2496.733 kb on + strandat 2496.733 kb on + strandat 2496.734 kb on - strandat 2496.745 kb on + strandat 2496.745 kb on + strandat 2496.745 kb on + strandat 2497.111 kb on - strandat 2497.192 kb on + strandat 2497.193 kb on - strandat 2497.370 kb on + strandat 2497.374 kb on + strandat 2497.385 kb on + strandat 2497.783 kb on + strand, within SMc01556at 2497.784 kb on - strand, within SMc01556at 2497.790 kb on - strand, within SMc01556at 2498.174 kb on - strandat 2498.174 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,496,206 + -1.4
2,496,209 + -1.9
2,496,209 + +3.4
2,496,210 - -2.1
2,496,232 + +0.2
2,496,240 + +0.3
2,496,241 - +1.2
2,496,253 + +2.1
2,496,253 + +0.5
2,496,253 + -0.3
2,496,254 - +0.1
2,496,414 - +0.7
2,496,500 + +1.2
2,496,501 - -1.5
2,496,521 + -1.4
2,496,569 + -2.6
2,496,570 - -0.3
2,496,584 + +0.6
2,496,585 - -1.1
2,496,654 + +0.1
2,496,717 + -0.4
2,496,718 - +0.1
2,496,718 - -1.1
2,496,722 + -0.1
2,496,723 - -0.8
2,496,723 - -2.3
2,496,723 - -0.4
2,496,733 + -0.2
2,496,733 + -1.0
2,496,734 - -0.6
2,496,745 + -0.5
2,496,745 + -1.3
2,496,745 + -0.9
2,497,111 - -3.1
2,497,192 + -3.3
2,497,193 - -0.7
2,497,370 + -2.5
2,497,374 + +1.3
2,497,385 + -0.5
2,497,783 + SMc01556 0.45 -0.5
2,497,784 - SMc01556 0.45 -0.9
2,497,790 - SMc01556 0.46 -0.6
2,498,174 - -0.5
2,498,174 - +0.1

Or see this region's nucleotide sequence