Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01569 and SMc01570 are separated by 38 nucleotides SMc01570 and SMc01571 are separated by 112 nucleotides SMc01571 and SMc01572 are separated by 24 nucleotides
SMc01569: SMc01569 - carbamoyl phosphate synthase small subunit, at 2,511,829 to 2,513,034
SMc01569
SMc01570: SMc01570 - transcriptional regulator, at 2,513,073 to 2,513,963
SMc01570
SMc01571: SMc01571 - oxidoreductase, at 2,514,076 to 2,514,837
SMc01571
SMc01572: SMc01572 - oxidoreductase, at 2,514,862 to 2,515,329
SMc01572
Position (kb)
2513
2514 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2512.444 kb on + strand, within SMc01569 at 2513.202 kb on - strand, within SMc01570 at 2513.447 kb on - strand, within SMc01570 at 2513.447 kb on - strand, within SMc01570 at 2514.085 kb on + strand at 2514.085 kb on + strand at 2514.086 kb on - strand at 2514.156 kb on - strand, within SMc01571 at 2514.173 kb on + strand, within SMc01571 at 2514.173 kb on + strand, within SMc01571 at 2514.173 kb on + strand, within SMc01571 at 2514.173 kb on + strand, within SMc01571 at 2514.174 kb on - strand, within SMc01571 at 2514.386 kb on - strand, within SMc01571 at 2514.386 kb on - strand, within SMc01571 at 2514.386 kb on - strand, within SMc01571 at 2514.386 kb on - strand, within SMc01571 at 2514.524 kb on - strand, within SMc01571 at 2514.592 kb on - strand, within SMc01571 at 2514.627 kb on + strand, within SMc01571 at 2514.627 kb on + strand, within SMc01571 at 2514.628 kb on - strand, within SMc01571 at 2514.936 kb on + strand, within SMc01572
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 2,512,444 + SMc01569 0.51 -0.3 2,513,202 - SMc01570 0.14 +0.1 2,513,447 - SMc01570 0.42 -0.4 2,513,447 - SMc01570 0.42 -1.4 2,514,085 + +0.1 2,514,085 + -0.1 2,514,086 - -1.2 2,514,156 - SMc01571 0.10 +1.9 2,514,173 + SMc01571 0.13 -0.2 2,514,173 + SMc01571 0.13 +0.2 2,514,173 + SMc01571 0.13 +0.5 2,514,173 + SMc01571 0.13 -0.5 2,514,174 - SMc01571 0.13 +0.0 2,514,386 - SMc01571 0.41 -1.0 2,514,386 - SMc01571 0.41 -1.5 2,514,386 - SMc01571 0.41 -1.0 2,514,386 - SMc01571 0.41 -2.3 2,514,524 - SMc01571 0.59 -0.5 2,514,592 - SMc01571 0.68 +0.2 2,514,627 + SMc01571 0.72 +1.1 2,514,627 + SMc01571 0.72 +0.5 2,514,628 - SMc01571 0.72 +0.1 2,514,936 + SMc01572 0.16 +1.5
Or see this region's nucleotide sequence