Strain Fitness in Sinorhizobium meliloti 1021 around SMc00913

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00914 and SMc00913 are separated by 500 nucleotidesSMc00913 and SMc00912 are separated by 75 nucleotidesSMc00912 and SMc00911 are separated by 268 nucleotides SMc00914: SMc00914 - oxidoreductase, at 867,417 to 868,634 SMc00914 SMc00913: SMc00913 - chaperonin GroEL, at 869,135 to 870,772 SMc00913 SMc00912: SMc00912 - co-chaperonin GroES, at 870,848 to 871,144 SMc00912 SMc00911: SMc00911 - hypothetical protein, at 871,413 to 872,240 SMc00911 Position (kb) 869 870 871Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 868.485 kb on + strand, within SMc00914at 868.540 kb on - strandat 868.631 kb on - strandat 868.632 kb on + strandat 868.632 kb on + strandat 868.633 kb on - strandat 868.633 kb on - strandat 868.636 kb on - strandat 868.665 kb on + strandat 868.665 kb on + strandat 868.666 kb on - strandat 868.666 kb on - strandat 868.672 kb on + strandat 868.672 kb on + strandat 868.672 kb on + strandat 868.672 kb on + strandat 868.672 kb on + strandat 868.674 kb on + strandat 868.674 kb on + strandat 868.674 kb on + strandat 868.675 kb on - strandat 868.675 kb on - strandat 868.675 kb on - strandat 868.675 kb on - strandat 868.716 kb on - strandat 868.716 kb on - strandat 868.791 kb on + strandat 868.868 kb on - strandat 868.868 kb on - strandat 868.942 kb on - strandat 868.942 kb on - strandat 868.944 kb on - strandat 868.944 kb on - strandat 868.976 kb on + strandat 868.983 kb on + strandat 868.984 kb on - strandat 869.120 kb on - strandat 871.150 kb on - strandat 871.398 kb on - strandat 871.409 kb on + strandat 871.409 kb on + strandat 871.409 kb on + strandat 871.409 kb on + strandat 871.409 kb on + strandat 871.410 kb on - strandat 871.410 kb on - strandat 871.410 kb on - strandat 871.410 kb on - strandat 871.464 kb on - strandat 871.584 kb on + strand, within SMc00911at 871.682 kb on - strand, within SMc00911

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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868,485 + SMc00914 0.88 -2.4
868,540 - -3.0
868,631 - -1.0
868,632 + +0.7
868,632 + -0.5
868,633 - -0.0
868,633 - -0.0
868,636 - +0.5
868,665 + +0.8
868,665 + -1.9
868,666 - +0.9
868,666 - -1.1
868,672 + -0.0
868,672 + +2.4
868,672 + -1.6
868,672 + -0.6
868,672 + +0.3
868,674 + +0.7
868,674 + +0.2
868,674 + +0.2
868,675 - -1.4
868,675 - +2.3
868,675 - +0.1
868,675 - +0.8
868,716 - +1.1
868,716 - -2.4
868,791 + +0.3
868,868 - +1.1
868,868 - -0.0
868,942 - +0.2
868,942 - -0.9
868,944 - +0.9
868,944 - +0.8
868,976 + -3.1
868,983 + -0.2
868,984 - +0.7
869,120 - +0.8
871,150 - -0.6
871,398 - +0.5
871,409 + -0.9
871,409 + +0.0
871,409 + -0.6
871,409 + +1.0
871,409 + +0.5
871,410 - -0.9
871,410 - +2.5
871,410 - +0.1
871,410 - +3.0
871,464 - +0.7
871,584 + SMc00911 0.21 +1.4
871,682 - SMc00911 0.32 -1.1

Or see this region's nucleotide sequence