Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00914 and SMc00913 are separated by 500 nucleotides SMc00913 and SMc00912 are separated by 75 nucleotides SMc00912 and SMc00911 are separated by 268 nucleotides
SMc00914: SMc00914 - oxidoreductase, at 867,417 to 868,634
SMc00914
SMc00913: SMc00913 - chaperonin GroEL, at 869,135 to 870,772
SMc00913
SMc00912: SMc00912 - co-chaperonin GroES, at 870,848 to 871,144
SMc00912
SMc00911: SMc00911 - hypothetical protein, at 871,413 to 872,240
SMc00911
Position (kb)
869
870
871 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 868.485 kb on + strand, within SMc00914 at 868.540 kb on - strand at 868.631 kb on - strand at 868.632 kb on + strand at 868.632 kb on + strand at 868.633 kb on - strand at 868.633 kb on - strand at 868.636 kb on - strand at 868.665 kb on + strand at 868.665 kb on + strand at 868.666 kb on - strand at 868.666 kb on - strand at 868.672 kb on + strand at 868.672 kb on + strand at 868.672 kb on + strand at 868.672 kb on + strand at 868.672 kb on + strand at 868.674 kb on + strand at 868.674 kb on + strand at 868.674 kb on + strand at 868.675 kb on - strand at 868.675 kb on - strand at 868.675 kb on - strand at 868.675 kb on - strand at 868.716 kb on - strand at 868.716 kb on - strand at 868.791 kb on + strand at 868.868 kb on - strand at 868.868 kb on - strand at 868.942 kb on - strand at 868.942 kb on - strand at 868.944 kb on - strand at 868.944 kb on - strand at 868.976 kb on + strand at 868.983 kb on + strand at 868.984 kb on - strand at 869.120 kb on - strand at 871.150 kb on - strand at 871.398 kb on - strand at 871.409 kb on + strand at 871.409 kb on + strand at 871.409 kb on + strand at 871.409 kb on + strand at 871.409 kb on + strand at 871.410 kb on - strand at 871.410 kb on - strand at 871.410 kb on - strand at 871.410 kb on - strand at 871.464 kb on - strand at 871.584 kb on + strand, within SMc00911 at 871.682 kb on - strand, within SMc00911
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 868,485 + SMc00914 0.88 -2.4 868,540 - -3.0 868,631 - -1.0 868,632 + +0.7 868,632 + -0.5 868,633 - -0.0 868,633 - -0.0 868,636 - +0.5 868,665 + +0.8 868,665 + -1.9 868,666 - +0.9 868,666 - -1.1 868,672 + -0.0 868,672 + +2.4 868,672 + -1.6 868,672 + -0.6 868,672 + +0.3 868,674 + +0.7 868,674 + +0.2 868,674 + +0.2 868,675 - -1.4 868,675 - +2.3 868,675 - +0.1 868,675 - +0.8 868,716 - +1.1 868,716 - -2.4 868,791 + +0.3 868,868 - +1.1 868,868 - -0.0 868,942 - +0.2 868,942 - -0.9 868,944 - +0.9 868,944 - +0.8 868,976 + -3.1 868,983 + -0.2 868,984 - +0.7 869,120 - +0.8 871,150 - -0.6 871,398 - +0.5 871,409 + -0.9 871,409 + +0.0 871,409 + -0.6 871,409 + +1.0 871,409 + +0.5 871,410 - -0.9 871,410 - +2.5 871,410 - +0.1 871,410 - +3.0 871,464 - +0.7 871,584 + SMc00911 0.21 +1.4 871,682 - SMc00911 0.32 -1.1
Or see this region's nucleotide sequence