Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00913 and SMc00912 are separated by 75 nucleotides SMc00912 and SMc00911 are separated by 268 nucleotides SMc00911 and SMc00910 are separated by 313 nucleotides
SMc00913: SMc00913 - chaperonin GroEL, at 869,135 to 870,772
SMc00913
SMc00912: SMc00912 - co-chaperonin GroES, at 870,848 to 871,144
SMc00912
SMc00911: SMc00911 - hypothetical protein, at 871,413 to 872,240
SMc00911
SMc00910: SMc00910 - hypothetical protein, at 872,554 to 873,402
SMc00910
Position (kb) 871
872
873 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 871.150 kb on - strand at 871.398 kb on - strand at 871.409 kb on + strand at 871.409 kb on + strand at 871.409 kb on + strand at 871.409 kb on + strand at 871.409 kb on + strand at 871.410 kb on - strand at 871.410 kb on - strand at 871.410 kb on - strand at 871.410 kb on - strand at 871.464 kb on - strand at 871.584 kb on + strand, within SMc00911 at 871.682 kb on - strand, within SMc00911 at 871.811 kb on - strand, within SMc00911 at 871.811 kb on - strand, within SMc00911 at 871.863 kb on + strand, within SMc00911 at 871.863 kb on + strand, within SMc00911 at 871.863 kb on + strand, within SMc00911 at 871.864 kb on - strand, within SMc00911 at 871.864 kb on - strand, within SMc00911 at 872.112 kb on + strand, within SMc00911 at 872.112 kb on + strand, within SMc00911 at 872.112 kb on + strand, within SMc00911 at 872.113 kb on - strand, within SMc00911 at 872.113 kb on - strand, within SMc00911 at 872.154 kb on + strand, within SMc00911 at 872.154 kb on + strand, within SMc00911 at 872.154 kb on + strand, within SMc00911 at 872.154 kb on + strand, within SMc00911 at 872.154 kb on + strand, within SMc00911 at 872.155 kb on - strand, within SMc00911 at 872.155 kb on - strand, within SMc00911 at 872.155 kb on - strand, within SMc00911 at 872.167 kb on - strand at 872.167 kb on - strand at 872.295 kb on + strand at 872.782 kb on + strand, within SMc00910 at 873.014 kb on + strand, within SMc00910 at 873.060 kb on + strand, within SMc00910 at 873.060 kb on + strand, within SMc00910 at 873.060 kb on + strand, within SMc00910 at 873.060 kb on + strand, within SMc00910 at 873.060 kb on + strand, within SMc00910 at 873.060 kb on + strand, within SMc00910 at 873.060 kb on + strand, within SMc00910 at 873.097 kb on + strand, within SMc00910 at 873.097 kb on + strand, within SMc00910
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 871,150 - -0.6 871,398 - +0.5 871,409 + -0.9 871,409 + +0.0 871,409 + -0.6 871,409 + +1.0 871,409 + +0.5 871,410 - -0.9 871,410 - +2.5 871,410 - +0.1 871,410 - +3.0 871,464 - +0.7 871,584 + SMc00911 0.21 +1.4 871,682 - SMc00911 0.32 -1.1 871,811 - SMc00911 0.48 +0.3 871,811 - SMc00911 0.48 -1.1 871,863 + SMc00911 0.54 -0.3 871,863 + SMc00911 0.54 -3.4 871,863 + SMc00911 0.54 -0.7 871,864 - SMc00911 0.54 +0.3 871,864 - SMc00911 0.54 -1.4 872,112 + SMc00911 0.84 +3.3 872,112 + SMc00911 0.84 -0.2 872,112 + SMc00911 0.84 +0.2 872,113 - SMc00911 0.85 +0.3 872,113 - SMc00911 0.85 +0.7 872,154 + SMc00911 0.89 -1.2 872,154 + SMc00911 0.89 +1.6 872,154 + SMc00911 0.89 +1.5 872,154 + SMc00911 0.89 -1.7 872,154 + SMc00911 0.89 +1.2 872,155 - SMc00911 0.90 +2.8 872,155 - SMc00911 0.90 +0.8 872,155 - SMc00911 0.90 +0.7 872,167 - +1.4 872,167 - -2.3 872,295 + +0.3 872,782 + SMc00910 0.27 -3.7 873,014 + SMc00910 0.54 +0.7 873,060 + SMc00910 0.60 +1.4 873,060 + SMc00910 0.60 +0.2 873,060 + SMc00910 0.60 +0.8 873,060 + SMc00910 0.60 -0.4 873,060 + SMc00910 0.60 -0.2 873,060 + SMc00910 0.60 +0.1 873,060 + SMc00910 0.60 +4.1 873,097 + SMc00910 0.64 +0.6 873,097 + SMc00910 0.64 +0.9
Or see this region's nucleotide sequence