Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00763 and SMc00764 are separated by 270 nucleotides SMc00764 and SMc00765 are separated by 329 nucleotides
SMc00763: SMc00763 - hypothetical protein, at 773,789 to 774,973
SMc00763
SMc00764: SMc00764 - hypothetical protein, at 775,244 to 775,384
SMc00764
SMc00765: SMc00765 - methyl-accepting chemotaxis protein, at 775,714 to 778,239
SMc00765
Position (kb) 775
776 Strain fitness (log2 ratio) -2
-1
0
1
2 at 774.311 kb on + strand, within SMc00763 at 774.506 kb on - strand, within SMc00763 at 774.506 kb on - strand, within SMc00763 at 774.525 kb on - strand, within SMc00763 at 774.525 kb on - strand, within SMc00763 at 774.525 kb on - strand, within SMc00763 at 774.875 kb on + strand at 774.876 kb on - strand at 774.920 kb on + strand at 775.015 kb on - strand at 775.024 kb on + strand at 775.025 kb on - strand at 775.037 kb on + strand at 775.037 kb on + strand at 775.037 kb on + strand at 775.145 kb on - strand at 775.275 kb on + strand, within SMc00764 at 775.276 kb on - strand, within SMc00764 at 775.276 kb on - strand, within SMc00764 at 775.325 kb on + strand, within SMc00764 at 775.325 kb on + strand, within SMc00764 at 775.325 kb on + strand, within SMc00764 at 775.428 kb on + strand at 775.470 kb on - strand at 775.487 kb on - strand at 775.730 kb on + strand at 775.731 kb on - strand at 775.731 kb on - strand at 775.820 kb on - strand at 775.897 kb on + strand at 775.898 kb on - strand at 775.898 kb on - strand at 775.898 kb on - strand at 775.898 kb on - strand at 775.898 kb on - strand at 776.303 kb on + strand, within SMc00765 at 776.354 kb on + strand, within SMc00765
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 774,311 + SMc00763 0.44 +0.3 774,506 - SMc00763 0.61 +0.1 774,506 - SMc00763 0.61 +0.0 774,525 - SMc00763 0.62 -0.3 774,525 - SMc00763 0.62 -1.0 774,525 - SMc00763 0.62 +0.5 774,875 + +0.3 774,876 - +0.6 774,920 + -0.1 775,015 - -0.3 775,024 + +1.2 775,025 - +0.3 775,037 + -0.2 775,037 + -0.1 775,037 + -2.5 775,145 - -0.7 775,275 + SMc00764 0.22 +0.8 775,276 - SMc00764 0.23 -0.7 775,276 - SMc00764 0.23 +1.1 775,325 + SMc00764 0.57 +0.5 775,325 + SMc00764 0.57 +0.7 775,325 + SMc00764 0.57 +1.6 775,428 + +0.3 775,470 - +1.0 775,487 - +0.8 775,730 + +0.2 775,731 - -0.1 775,731 - +0.0 775,820 - +0.8 775,897 + -0.2 775,898 - -0.1 775,898 - +0.4 775,898 - +0.4 775,898 - -0.9 775,898 - +2.1 776,303 + SMc00765 0.23 -0.1 776,354 + SMc00765 0.25 +0.2
Or see this region's nucleotide sequence