Strain Fitness in Sinorhizobium meliloti 1021 around SMc00485

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00486 and SMc00485 are separated by 145 nucleotidesSMc00485 and SMc00484 are separated by 251 nucleotides SMc00486: SMc00486 - Glutaminase (EC 3.5.1.2) (from data), at 1,929,452 to 1,930,399 SMc00486 SMc00485: SMc00485 - 30S ribosomal protein S4, at 1,930,545 to 1,931,162 SMc00485 SMc00484: SMc00484 - hypothetical protein, at 1,931,414 to 1,932,928 SMc00484 Position (kb) 1930 1931 1932Strain fitness (log2 ratio) -3 -2 -1 0 1at 1929.630 kb on + strand, within SMc00486at 1929.673 kb on + strand, within SMc00486at 1929.673 kb on + strand, within SMc00486at 1929.673 kb on + strand, within SMc00486at 1929.673 kb on + strand, within SMc00486at 1929.673 kb on + strand, within SMc00486at 1929.674 kb on - strand, within SMc00486at 1929.674 kb on - strand, within SMc00486at 1929.810 kb on + strand, within SMc00486at 1929.811 kb on - strand, within SMc00486at 1929.954 kb on + strand, within SMc00486at 1929.954 kb on + strand, within SMc00486at 1930.023 kb on - strand, within SMc00486at 1930.023 kb on - strand, within SMc00486at 1930.136 kb on + strand, within SMc00486at 1930.231 kb on - strand, within SMc00486at 1930.300 kb on + strand, within SMc00486at 1930.301 kb on - strand, within SMc00486at 1930.302 kb on + strand, within SMc00486at 1930.302 kb on + strand, within SMc00486at 1930.302 kb on + strand, within SMc00486at 1930.302 kb on + strand, within SMc00486at 1930.303 kb on - strand, within SMc00486at 1930.303 kb on - strand, within SMc00486at 1930.303 kb on - strand, within SMc00486at 1930.303 kb on - strand, within SMc00486at 1930.303 kb on - strand, within SMc00486at 1930.303 kb on - strand, within SMc00486at 1930.303 kb on - strand, within SMc00486at 1930.348 kb on - strandat 1930.348 kb on - strandat 1930.348 kb on - strandat 1930.465 kb on - strandat 1930.465 kb on - strandat 1930.488 kb on + strandat 1931.397 kb on + strandat 1931.398 kb on - strandat 1931.398 kb on - strandat 1931.853 kb on + strand, within SMc00484at 1931.854 kb on - strand, within SMc00484at 1932.019 kb on + strand, within SMc00484at 1932.020 kb on - strand, within SMc00484

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,929,630 + SMc00486 0.19 -1.3
1,929,673 + SMc00486 0.23 +0.8
1,929,673 + SMc00486 0.23 +0.0
1,929,673 + SMc00486 0.23 +1.5
1,929,673 + SMc00486 0.23 +0.5
1,929,673 + SMc00486 0.23 +0.2
1,929,674 - SMc00486 0.23 -0.4
1,929,674 - SMc00486 0.23 +0.3
1,929,810 + SMc00486 0.38 -0.3
1,929,811 - SMc00486 0.38 -0.6
1,929,954 + SMc00486 0.53 -0.8
1,929,954 + SMc00486 0.53 -1.3
1,930,023 - SMc00486 0.60 +0.4
1,930,023 - SMc00486 0.60 -0.2
1,930,136 + SMc00486 0.72 +1.3
1,930,231 - SMc00486 0.82 -0.1
1,930,300 + SMc00486 0.89 -0.4
1,930,301 - SMc00486 0.90 -0.2
1,930,302 + SMc00486 0.90 -1.0
1,930,302 + SMc00486 0.90 +1.0
1,930,302 + SMc00486 0.90 -0.1
1,930,302 + SMc00486 0.90 -1.4
1,930,303 - SMc00486 0.90 +0.4
1,930,303 - SMc00486 0.90 +0.7
1,930,303 - SMc00486 0.90 -3.3
1,930,303 - SMc00486 0.90 -0.0
1,930,303 - SMc00486 0.90 -0.9
1,930,303 - SMc00486 0.90 +1.3
1,930,303 - SMc00486 0.90 +0.4
1,930,348 - +0.1
1,930,348 - -1.1
1,930,348 - +0.4
1,930,465 - +0.4
1,930,465 - -0.8
1,930,488 + +0.2
1,931,397 + -2.7
1,931,398 - +1.1
1,931,398 - +1.1
1,931,853 + SMc00484 0.29 +0.3
1,931,854 - SMc00484 0.29 -0.4
1,932,019 + SMc00484 0.40 -3.7
1,932,020 - SMc00484 0.40 -0.2

Or see this region's nucleotide sequence