Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00408 and SMc00409 are separated by 110 nucleotides SMc00409 and SMc00410 are separated by 248 nucleotides SMc00410 and SMc00411 are separated by 120 nucleotides SMc00411 and SMc00412 are separated by 105 nucleotides
SMc00408: SMc00408 - UDP pyrophosphate phosphatase, at 359,249 to 360,055
SMc00408
SMc00409: SMc00409 - signal peptide protein, at 360,166 to 360,327
SMc00409
SMc00410: SMc00410 - oxidoreductase, at 360,576 to 361,556
SMc00410
SMc00411: SMc00411 - hypothetical protein, at 361,677 to 361,964
SMc00411
SMc00412: SMc00412 - orotidine 5'-phosphate decarboxylase, at 362,070 to 362,774
SMc00412
Position (kb) 360
361
362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 360.071 kb on + strand at 360.072 kb on - strand at 360.425 kb on - strand at 360.562 kb on - strand at 360.599 kb on + strand at 360.599 kb on + strand at 360.600 kb on - strand at 360.600 kb on - strand at 360.600 kb on - strand at 360.600 kb on - strand at 360.601 kb on + strand at 360.602 kb on - strand at 360.602 kb on - strand at 360.602 kb on - strand at 360.624 kb on + strand at 360.631 kb on + strand at 360.631 kb on + strand at 360.631 kb on + strand at 360.632 kb on - strand at 360.675 kb on - strand, within SMc00410 at 360.979 kb on + strand, within SMc00410 at 361.162 kb on + strand, within SMc00410 at 361.162 kb on + strand, within SMc00410 at 361.163 kb on - strand, within SMc00410 at 361.203 kb on - strand, within SMc00410 at 361.203 kb on - strand, within SMc00410 at 361.203 kb on - strand, within SMc00410 at 361.596 kb on + strand at 361.596 kb on + strand at 361.596 kb on + strand at 361.597 kb on - strand at 361.600 kb on + strand at 361.600 kb on + strand at 361.600 kb on + strand at 361.601 kb on - strand at 361.811 kb on + strand, within SMc00411 at 361.903 kb on + strand, within SMc00411 at 361.903 kb on + strand, within SMc00411 at 361.904 kb on - strand, within SMc00411 at 361.904 kb on - strand, within SMc00411 at 361.910 kb on + strand, within SMc00411 at 361.911 kb on - strand, within SMc00411 at 361.929 kb on + strand, within SMc00411 at 361.929 kb on + strand, within SMc00411 at 361.929 kb on + strand, within SMc00411 at 361.930 kb on - strand, within SMc00411 at 361.930 kb on - strand, within SMc00411 at 361.931 kb on + strand, within SMc00411 at 361.932 kb on - strand, within SMc00411 at 361.932 kb on - strand, within SMc00411 at 361.951 kb on + strand at 362.005 kb on + strand at 362.005 kb on + strand at 362.006 kb on - strand at 362.006 kb on - strand at 362.006 kb on - strand at 362.059 kb on + strand at 362.061 kb on + strand at 362.380 kb on + strand, within SMc00412 at 362.381 kb on - strand, within SMc00412 at 362.386 kb on + strand, within SMc00412 at 362.497 kb on + strand, within SMc00412 at 362.497 kb on + strand, within SMc00412
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 360,071 + +0.9 360,072 - +0.7 360,425 - -0.9 360,562 - -0.1 360,599 + -0.1 360,599 + +0.2 360,600 - +0.3 360,600 - -0.1 360,600 - +0.1 360,600 - +2.0 360,601 + +1.0 360,602 - -0.1 360,602 - -1.4 360,602 - -1.5 360,624 + +0.3 360,631 + -0.4 360,631 + +0.4 360,631 + -0.4 360,632 - -1.5 360,675 - SMc00410 0.10 -0.7 360,979 + SMc00410 0.41 -0.9 361,162 + SMc00410 0.60 +3.1 361,162 + SMc00410 0.60 -0.3 361,163 - SMc00410 0.60 -1.1 361,203 - SMc00410 0.64 +1.9 361,203 - SMc00410 0.64 +0.3 361,203 - SMc00410 0.64 +1.5 361,596 + +0.5 361,596 + -2.4 361,596 + +0.3 361,597 - -0.2 361,600 + -0.5 361,600 + -0.4 361,600 + +0.6 361,601 - -0.3 361,811 + SMc00411 0.47 +0.1 361,903 + SMc00411 0.78 +0.4 361,903 + SMc00411 0.78 -2.0 361,904 - SMc00411 0.79 -0.1 361,904 - SMc00411 0.79 +1.0 361,910 + SMc00411 0.81 +2.8 361,911 - SMc00411 0.81 -0.7 361,929 + SMc00411 0.88 -0.3 361,929 + SMc00411 0.88 -0.6 361,929 + SMc00411 0.88 -0.1 361,930 - SMc00411 0.88 +2.8 361,930 - SMc00411 0.88 +1.3 361,931 + SMc00411 0.88 +1.8 361,932 - SMc00411 0.89 +2.1 361,932 - SMc00411 0.89 +1.8 361,951 + -1.1 362,005 + -0.5 362,005 + +0.3 362,006 - -0.1 362,006 - +0.3 362,006 - +0.4 362,059 + +0.8 362,061 + +1.0 362,380 + SMc00412 0.44 -2.4 362,381 - SMc00412 0.44 -1.1 362,386 + SMc00412 0.45 +1.2 362,497 + SMc00412 0.61 -3.5 362,497 + SMc00412 0.61 +0.2
Or see this region's nucleotide sequence