Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0275 and SMa0277 are separated by 169 nucleotides SMa0277 and SMa5016 are separated by 241 nucleotides SMa5016 and SMa0279 are separated by 310 nucleotides
SMa0275: SMa0275 - hypothetical protein, at 154,841 to 155,428
SMa0275
SMa0277: SMa0277 - hypothetical protein, at 155,598 to 155,948
SMa0277
SMa5016: SMa5016 - hypothetical protein, at 156,190 to 156,489
SMa5016
SMa0279: SMa0279 - hypothetical protein, at 156,800 to 157,411
SMa0279
Position (kb) 156
157 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 155.300 kb on + strand, within SMa0275 at 155.300 kb on + strand, within SMa0275 at 155.300 kb on + strand, within SMa0275 at 155.327 kb on + strand, within SMa0275 at 155.328 kb on - strand, within SMa0275 at 155.427 kb on - strand at 155.524 kb on - strand at 155.599 kb on + strand at 155.600 kb on - strand at 155.679 kb on - strand, within SMa0277 at 155.685 kb on - strand, within SMa0277 at 155.726 kb on + strand, within SMa0277 at 155.896 kb on + strand, within SMa0277 at 155.905 kb on + strand, within SMa0277 at 155.984 kb on + strand at 155.984 kb on + strand at 155.985 kb on - strand at 155.985 kb on - strand at 156.181 kb on + strand at 156.182 kb on - strand at 156.191 kb on + strand at 156.192 kb on - strand at 156.192 kb on - strand at 156.330 kb on - strand, within SMa5016 at 156.387 kb on + strand, within SMa5016 at 156.388 kb on - strand, within SMa5016 at 156.413 kb on + strand, within SMa5016 at 156.413 kb on + strand, within SMa5016 at 156.414 kb on - strand, within SMa5016 at 156.419 kb on + strand, within SMa5016 at 156.419 kb on + strand, within SMa5016 at 156.419 kb on + strand, within SMa5016 at 156.420 kb on - strand, within SMa5016 at 156.420 kb on - strand, within SMa5016 at 156.478 kb on - strand at 156.514 kb on + strand at 156.514 kb on + strand at 156.515 kb on - strand at 156.568 kb on + strand at 156.574 kb on + strand at 156.574 kb on + strand at 156.575 kb on - strand at 156.741 kb on - strand at 156.741 kb on - strand at 156.748 kb on - strand at 156.751 kb on - strand at 156.751 kb on - strand at 156.755 kb on - strand at 156.755 kb on - strand at 156.826 kb on - strand at 156.826 kb on - strand at 156.858 kb on + strand at 156.967 kb on + strand, within SMa0279 at 156.967 kb on + strand, within SMa0279 at 156.968 kb on - strand, within SMa0279 at 156.983 kb on + strand, within SMa0279 at 157.261 kb on - strand, within SMa0279 at 157.377 kb on - strand at 157.401 kb on + strand at 157.401 kb on + strand at 157.402 kb on - strand at 157.449 kb on + strand at 157.450 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 155,300 + SMa0275 0.78 +1.0 155,300 + SMa0275 0.78 -1.7 155,300 + SMa0275 0.78 +0.3 155,327 + SMa0275 0.83 -3.0 155,328 - SMa0275 0.83 -0.7 155,427 - +0.1 155,524 - -0.6 155,599 + -0.8 155,600 - +0.2 155,679 - SMa0277 0.23 +0.3 155,685 - SMa0277 0.25 -0.6 155,726 + SMa0277 0.36 +2.4 155,896 + SMa0277 0.85 +0.0 155,905 + SMa0277 0.87 +0.4 155,984 + -1.1 155,984 + -0.9 155,985 - -2.1 155,985 - -2.6 156,181 + -0.1 156,182 - -0.7 156,191 + +0.1 156,192 - +0.6 156,192 - -0.8 156,330 - SMa5016 0.47 -0.2 156,387 + SMa5016 0.66 -1.1 156,388 - SMa5016 0.66 -0.1 156,413 + SMa5016 0.74 -0.2 156,413 + SMa5016 0.74 -0.5 156,414 - SMa5016 0.75 +3.1 156,419 + SMa5016 0.76 -0.3 156,419 + SMa5016 0.76 +0.6 156,419 + SMa5016 0.76 +1.5 156,420 - SMa5016 0.77 +0.1 156,420 - SMa5016 0.77 +0.6 156,478 - +0.4 156,514 + -0.1 156,514 + -1.9 156,515 - -1.0 156,568 + +0.7 156,574 + -1.9 156,574 + -0.4 156,575 - +0.1 156,741 - +1.7 156,741 - -1.4 156,748 - -0.3 156,751 - +2.5 156,751 - +0.1 156,755 - -2.4 156,755 - -0.4 156,826 - -0.6 156,826 - +1.3 156,858 + -0.5 156,967 + SMa0279 0.27 +1.9 156,967 + SMa0279 0.27 -0.5 156,968 - SMa0279 0.27 -0.5 156,983 + SMa0279 0.30 +0.6 157,261 - SMa0279 0.75 -0.2 157,377 - +0.4 157,401 + +0.3 157,401 + -0.2 157,402 - -1.2 157,449 + -1.0 157,450 - +0.1
Or see this region's nucleotide sequence