Strain Fitness in Sinorhizobium meliloti 1021 around SMa1243

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1239 and SMa1240 overlap by 8 nucleotidesSMa1240 and SMa1241 are separated by 7 nucleotidesSMa1241 and SMa1243 are separated by 259 nucleotidesSMa1243 and SMa1245 are separated by 110 nucleotides SMa1239: SMa1239 - NapD component of periplasmic nitrate reductase, at 679,677 to 679,964 SMa1239 SMa1240: SMa1240 - NapF ferredoxin component of periplasmic nitrate reductase, at 679,957 to 680,457 SMa1240 SMa1241: SMa1241 - NapE component of periplasmic nitrate reductase, at 680,465 to 680,650 SMa1241 SMa1243: SMa1243 - Azu1 pseudoazurin, at 680,910 to 681,353 SMa1243 SMa1245: SMa1245 - Crp/fnr-like transcriptional regulator, at 681,464 to 682,111 SMa1245 Position (kb) 680 681 682Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 679.937 kb on + strandat 679.942 kb on + strandat 679.942 kb on + strandat 679.942 kb on + strandat 680.055 kb on + strand, within SMa1240at 680.731 kb on - strandat 680.911 kb on + strandat 681.092 kb on + strandat 681.094 kb on + strand, within SMa1243at 681.094 kb on + strand, within SMa1243at 681.095 kb on - strand, within SMa1243at 681.164 kb on + strand, within SMa1243at 681.164 kb on + strand, within SMa1243at 681.165 kb on - strand, within SMa1243at 681.165 kb on - strand, within SMa1243at 681.406 kb on - strandat 681.411 kb on - strandat 681.465 kb on + strandat 681.466 kb on - strandat 681.644 kb on + strand, within SMa1245at 681.645 kb on - strand, within SMa1245at 681.784 kb on + strand, within SMa1245at 681.784 kb on + strand, within SMa1245at 681.784 kb on + strand, within SMa1245at 681.785 kb on - strand, within SMa1245at 682.171 kb on + strandat 682.217 kb on + strandat 682.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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679,937 + -0.9
679,942 + +0.1
679,942 + -0.6
679,942 + -0.9
680,055 + SMa1240 0.20 -2.3
680,731 - +1.7
680,911 + -0.7
681,092 + +0.7
681,094 + SMa1243 0.41 +0.3
681,094 + SMa1243 0.41 -1.8
681,095 - SMa1243 0.42 -0.7
681,164 + SMa1243 0.57 +0.6
681,164 + SMa1243 0.57 -0.9
681,165 - SMa1243 0.57 -3.7
681,165 - SMa1243 0.57 -0.4
681,406 - -0.1
681,411 - +0.4
681,465 + -2.5
681,466 - +0.1
681,644 + SMa1245 0.28 -2.6
681,645 - SMa1245 0.28 +0.0
681,784 + SMa1245 0.49 -4.1
681,784 + SMa1245 0.49 +0.9
681,784 + SMa1245 0.49 +2.5
681,785 - SMa1245 0.50 +2.6
682,171 + +0.8
682,217 + -3.1
682,218 - -2.5

Or see this region's nucleotide sequence