Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1194 and SMa1195 are separated by 15 nucleotides SMa1195 and SMa1197 are separated by 175 nucleotides SMa1197 and SMa1198 are separated by 53 nucleotides
SMa1194: SMa1194 - NnrS dehydrogenase, at 656,365 to 657,546
SMa1194
SMa1195: SMa1195 - hypothetical protein, at 657,562 to 658,236
SMa1195
SMa1197: SMa1197 - hypothetical protein, at 658,412 to 658,774
SMa1197
SMa1198: SMa1198 - copper export protein, at 658,828 to 660,453
SMa1198
Position (kb) 658
659 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 657.474 kb on + strand at 657.475 kb on - strand at 657.483 kb on + strand at 657.494 kb on - strand at 657.552 kb on - strand at 657.552 kb on - strand at 657.663 kb on + strand at 657.663 kb on + strand, within SMa1195 at 657.666 kb on - strand, within SMa1195 at 657.666 kb on - strand, within SMa1195 at 657.883 kb on + strand, within SMa1195 at 657.883 kb on + strand, within SMa1195 at 657.989 kb on + strand, within SMa1195 at 657.989 kb on + strand, within SMa1195 at 657.990 kb on - strand, within SMa1195 at 658.054 kb on + strand, within SMa1195 at 658.055 kb on - strand, within SMa1195 at 658.225 kb on + strand at 658.282 kb on + strand at 658.330 kb on + strand at 658.330 kb on + strand at 658.330 kb on + strand at 658.331 kb on - strand at 658.535 kb on + strand, within SMa1197 at 658.540 kb on + strand, within SMa1197 at 658.540 kb on + strand, within SMa1197 at 658.540 kb on + strand, within SMa1197 at 658.541 kb on - strand, within SMa1197 at 658.669 kb on + strand, within SMa1197 at 658.670 kb on - strand, within SMa1197 at 658.670 kb on - strand, within SMa1197 at 658.714 kb on + strand, within SMa1197 at 658.715 kb on - strand, within SMa1197 at 658.715 kb on - strand, within SMa1197 at 658.715 kb on - strand, within SMa1197 at 658.715 kb on - strand, within SMa1197 at 658.776 kb on + strand at 658.777 kb on - strand at 658.988 kb on - strand at 658.988 kb on - strand at 659.498 kb on + strand, within SMa1198 at 659.498 kb on + strand, within SMa1198 at 659.499 kb on - strand, within SMa1198 at 659.543 kb on - strand, within SMa1198 at 659.769 kb on + strand, within SMa1198
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 657,474 + +0.0 657,475 - -0.1 657,483 + -1.1 657,494 - +0.3 657,552 - +0.7 657,552 - +0.6 657,663 + -0.7 657,663 + SMa1195 0.15 -0.4 657,666 - SMa1195 0.15 -0.5 657,666 - SMa1195 0.15 -0.2 657,883 + SMa1195 0.48 +0.2 657,883 + SMa1195 0.48 +1.4 657,989 + SMa1195 0.63 -2.2 657,989 + SMa1195 0.63 -0.5 657,990 - SMa1195 0.63 +1.2 658,054 + SMa1195 0.73 -1.1 658,055 - SMa1195 0.73 -0.1 658,225 + -0.3 658,282 + +0.4 658,330 + +2.1 658,330 + -1.4 658,330 + +1.8 658,331 - +0.1 658,535 + SMa1197 0.34 -0.3 658,540 + SMa1197 0.35 +0.4 658,540 + SMa1197 0.35 +2.8 658,540 + SMa1197 0.35 -4.1 658,541 - SMa1197 0.36 -1.8 658,669 + SMa1197 0.71 -1.2 658,670 - SMa1197 0.71 -0.9 658,670 - SMa1197 0.71 -0.4 658,714 + SMa1197 0.83 +1.5 658,715 - SMa1197 0.83 -1.4 658,715 - SMa1197 0.83 +0.0 658,715 - SMa1197 0.83 -2.2 658,715 - SMa1197 0.83 +0.3 658,776 + +0.4 658,777 - -1.2 658,988 - +0.7 658,988 - -0.4 659,498 + SMa1198 0.41 +1.0 659,498 + SMa1198 0.41 +0.8 659,499 - SMa1198 0.41 +0.5 659,543 - SMa1198 0.44 +0.3 659,769 + SMa1198 0.58 +0.7
Or see this region's nucleotide sequence