Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1052 and SMa1053 overlap by 4 nucleotides SMa1053 and SMa1056 overlap by 4 nucleotides SMa1056 and SMa1057 overlap by 10 nucleotides SMa1057 and SMa1058 are separated by 121 nucleotides SMa1058 and SMa1060 are separated by 301 nucleotides
SMa1052: SMa1052 - hypothetical protein, at 576,639 to 577,070
SMa1052
SMa1053: SMa1053 - hypothetical protein, at 577,067 to 577,477
SMa1053
SMa1056: SMa1056 - transcriptional regulator, at 577,474 to 577,821
SMa1056
SMa1057: SMa1057 - hypothetical protein, at 577,812 to 579,110
SMa1057
SMa1058: SMa1058 - hypothetical protein, at 579,232 to 579,684
SMa1058
SMa1060: SMa1060 - hypothetical protein, at 579,986 to 581,353
SMa1060
Position (kb) 577
578
579
580 Strain fitness (log2 ratio) -2
-1
0
1
2 at 577.317 kb on - strand, within SMa1053 at 577.387 kb on + strand, within SMa1053 at 577.636 kb on + strand, within SMa1056 at 577.637 kb on - strand, within SMa1056 at 577.833 kb on + strand at 577.834 kb on - strand at 578.252 kb on + strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.297 kb on + strand, within SMa1057 at 578.363 kb on + strand, within SMa1057 at 578.412 kb on - strand, within SMa1057 at 578.412 kb on - strand, within SMa1057 at 578.443 kb on + strand, within SMa1057 at 578.521 kb on + strand, within SMa1057 at 578.522 kb on - strand at 578.522 kb on - strand, within SMa1057 at 578.632 kb on + strand, within SMa1057 at 578.632 kb on + strand, within SMa1057 at 578.633 kb on - strand, within SMa1057 at 578.633 kb on - strand, within SMa1057 at 578.800 kb on + strand, within SMa1057 at 578.801 kb on - strand, within SMa1057 at 578.929 kb on + strand, within SMa1057 at 579.064 kb on - strand at 579.102 kb on - strand at 579.102 kb on - strand at 579.102 kb on - strand at 579.102 kb on - strand at 579.102 kb on - strand at 579.104 kb on + strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.254 kb on + strand at 579.507 kb on + strand, within SMa1058 at 579.508 kb on - strand, within SMa1058 at 579.615 kb on - strand, within SMa1058 at 579.648 kb on - strand at 579.743 kb on + strand at 579.743 kb on + strand at 579.744 kb on - strand at 579.980 kb on + strand at 579.981 kb on - strand at 580.050 kb on + strand at 580.050 kb on + strand at 580.051 kb on - strand at 580.051 kb on - strand at 580.068 kb on + strand at 580.068 kb on + strand at 580.069 kb on - strand at 580.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 577,317 - SMa1053 0.61 -0.8 577,387 + SMa1053 0.78 -2.5 577,636 + SMa1056 0.47 -2.0 577,637 - SMa1056 0.47 +0.6 577,833 + +0.6 577,834 - +1.0 578,252 + SMa1057 0.34 -0.6 578,253 - SMa1057 0.34 -1.1 578,253 - SMa1057 0.34 -0.4 578,253 - SMa1057 0.34 -0.4 578,253 - SMa1057 0.34 +1.0 578,253 - SMa1057 0.34 -1.5 578,253 - SMa1057 0.34 -0.5 578,297 + SMa1057 0.37 +0.6 578,363 + SMa1057 0.42 -0.4 578,412 - SMa1057 0.46 -2.7 578,412 - SMa1057 0.46 +1.5 578,443 + SMa1057 0.49 -0.1 578,521 + SMa1057 0.55 +1.1 578,522 - +2.5 578,522 - SMa1057 0.55 +1.3 578,632 + SMa1057 0.63 +1.6 578,632 + SMa1057 0.63 +0.3 578,633 - SMa1057 0.63 +0.8 578,633 - SMa1057 0.63 -0.9 578,800 + SMa1057 0.76 -2.0 578,801 - SMa1057 0.76 +0.6 578,929 + SMa1057 0.86 -1.6 579,064 - +0.2 579,102 - +0.0 579,102 - +0.9 579,102 - -1.4 579,102 - +1.9 579,102 - -0.0 579,104 + -0.1 579,105 - +0.0 579,105 - -0.1 579,105 - +0.8 579,254 + +0.8 579,507 + SMa1058 0.61 +1.0 579,508 - SMa1058 0.61 +1.9 579,615 - SMa1058 0.85 +0.2 579,648 - +0.0 579,743 + -0.8 579,743 + -0.0 579,744 - -1.0 579,980 + +0.5 579,981 - +1.5 580,050 + +1.1 580,050 + -1.0 580,051 - -0.2 580,051 - -0.4 580,068 + -0.3 580,068 + +0.4 580,069 - +0.4 580,069 - +0.9
Or see this region's nucleotide sequence