Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1002 and SMa1004 are separated by 236 nucleotides SMa1004 and SMa1005 are separated by 78 nucleotides SMa1005 and SMa1007 are separated by 185 nucleotides SMa1007 and SMa1008 are separated by 282 nucleotides
SMa1002: SMa1002 - hypothetical protein, at 555,788 to 556,162
SMa1002
SMa1004: SMa1004 - hypothetical protein, at 556,399 to 556,761
SMa1004
SMa1005: SMa1005 - hypothetical protein, at 556,840 to 557,640
SMa1005
SMa1007: SMa1007 - copper protein, at 557,826 to 558,254
SMa1007
SMa1008: SMa1008 - hypothetical protein, at 558,537 to 558,992
SMa1008
Position (kb) 556
557
558 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 555.963 kb on + strand, within SMa1002 at 555.964 kb on - strand, within SMa1002 at 556.168 kb on + strand at 556.201 kb on - strand at 556.217 kb on + strand at 556.218 kb on - strand at 556.278 kb on + strand at 556.349 kb on + strand at 556.350 kb on - strand at 556.350 kb on - strand at 556.408 kb on + strand at 556.408 kb on + strand at 556.408 kb on + strand at 556.409 kb on - strand at 556.608 kb on + strand, within SMa1004 at 556.608 kb on + strand, within SMa1004 at 556.625 kb on + strand, within SMa1004 at 556.625 kb on + strand, within SMa1004 at 556.626 kb on - strand, within SMa1004 at 556.626 kb on - strand, within SMa1004 at 556.718 kb on + strand, within SMa1004 at 556.795 kb on - strand at 556.839 kb on + strand at 556.839 kb on + strand at 556.839 kb on + strand at 556.839 kb on + strand at 556.839 kb on + strand at 556.840 kb on - strand at 556.840 kb on - strand at 556.840 kb on - strand at 556.915 kb on + strand at 556.942 kb on + strand, within SMa1005 at 556.943 kb on - strand, within SMa1005 at 557.020 kb on - strand, within SMa1005 at 557.020 kb on - strand, within SMa1005 at 557.119 kb on + strand, within SMa1005 at 557.170 kb on + strand, within SMa1005 at 557.382 kb on + strand, within SMa1005 at 557.501 kb on + strand, within SMa1005 at 557.501 kb on + strand, within SMa1005 at 557.502 kb on - strand, within SMa1005 at 557.502 kb on - strand, within SMa1005 at 557.502 kb on - strand, within SMa1005 at 557.502 kb on - strand, within SMa1005 at 557.729 kb on + strand at 557.760 kb on - strand at 557.760 kb on - strand at 557.822 kb on + strand at 557.822 kb on + strand at 557.822 kb on + strand at 557.823 kb on - strand at 557.823 kb on - strand at 557.823 kb on - strand at 557.825 kb on + strand at 557.825 kb on + strand at 557.825 kb on + strand at 557.825 kb on + strand at 557.826 kb on - strand at 557.846 kb on - strand at 558.004 kb on + strand, within SMa1007 at 558.004 kb on + strand, within SMa1007 at 558.005 kb on - strand, within SMa1007 at 558.097 kb on + strand, within SMa1007 at 558.097 kb on + strand, within SMa1007 at 558.173 kb on + strand, within SMa1007 at 558.364 kb on + strand at 558.364 kb on + strand at 558.395 kb on + strand at 558.396 kb on - strand at 558.396 kb on - strand at 558.399 kb on + strand at 558.400 kb on - strand at 558.467 kb on - strand at 558.495 kb on + strand at 558.495 kb on + strand at 558.495 kb on + strand at 558.495 kb on + strand at 558.495 kb on + strand at 558.496 kb on - strand at 558.496 kb on - strand at 558.562 kb on + strand at 558.605 kb on - strand, within SMa1008 at 558.605 kb on - strand, within SMa1008 at 558.605 kb on - strand, within SMa1008
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 555,963 + SMa1002 0.47 -2.6 555,964 - SMa1002 0.47 -1.5 556,168 + -0.2 556,201 - -0.5 556,217 + +0.9 556,218 - -2.3 556,278 + -1.0 556,349 + -0.7 556,350 - -0.6 556,350 - +1.4 556,408 + -2.0 556,408 + -0.4 556,408 + -2.3 556,409 - +0.5 556,608 + SMa1004 0.58 -1.5 556,608 + SMa1004 0.58 +0.1 556,625 + SMa1004 0.62 -0.9 556,625 + SMa1004 0.62 +0.9 556,626 - SMa1004 0.63 +0.2 556,626 - SMa1004 0.63 +0.2 556,718 + SMa1004 0.88 +0.2 556,795 - -0.5 556,839 + +0.8 556,839 + -0.6 556,839 + -0.6 556,839 + +0.4 556,839 + -0.5 556,840 - +0.9 556,840 - -2.1 556,840 - +0.5 556,915 + +1.8 556,942 + SMa1005 0.13 +0.2 556,943 - SMa1005 0.13 +0.2 557,020 - SMa1005 0.22 -1.6 557,020 - SMa1005 0.22 -0.2 557,119 + SMa1005 0.35 +0.1 557,170 + SMa1005 0.41 -0.8 557,382 + SMa1005 0.68 -1.4 557,501 + SMa1005 0.83 +1.2 557,501 + SMa1005 0.83 -1.0 557,502 - SMa1005 0.83 -0.2 557,502 - SMa1005 0.83 -0.6 557,502 - SMa1005 0.83 -1.0 557,502 - SMa1005 0.83 -0.6 557,729 + +1.2 557,760 - -2.8 557,760 - -0.0 557,822 + -1.0 557,822 + +4.4 557,822 + +0.4 557,823 - +0.6 557,823 - -1.1 557,823 - -0.4 557,825 + +0.1 557,825 + +0.9 557,825 + +0.6 557,825 + +1.1 557,826 - -0.6 557,846 - +1.3 558,004 + SMa1007 0.41 +0.4 558,004 + SMa1007 0.41 +3.5 558,005 - SMa1007 0.42 +0.2 558,097 + SMa1007 0.63 -0.1 558,097 + SMa1007 0.63 -0.1 558,173 + SMa1007 0.81 +0.6 558,364 + +2.6 558,364 + -1.3 558,395 + +0.0 558,396 - +0.4 558,396 - -1.1 558,399 + +0.2 558,400 - -0.7 558,467 - -2.0 558,495 + -0.1 558,495 + +2.2 558,495 + -0.0 558,495 + -0.2 558,495 + -2.5 558,496 - +0.8 558,496 - -0.9 558,562 + +0.5 558,605 - SMa1008 0.15 +0.4 558,605 - SMa1008 0.15 +0.8 558,605 - SMa1008 0.15 -2.1
Or see this region's nucleotide sequence