Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0945 and SMa0947 are separated by 405 nucleotides SMa0947 and SMa0950 are separated by 317 nucleotides
SMa0945: SMa0945 - hypothetical protein, at 528,169 to 528,744
SMa0945
SMa0947: SMa0947 - hypothetical protein, at 529,150 to 529,464
SMa0947
SMa0950: SMa0950 - ABC transporter substrate-binding protein, at 529,782 to 530,855
SMa0950
Position (kb) 529
530 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 528.250 kb on + strand, within SMa0945 at 528.268 kb on + strand, within SMa0945 at 528.269 kb on - strand, within SMa0945 at 528.274 kb on + strand, within SMa0945 at 528.314 kb on + strand, within SMa0945 at 528.314 kb on + strand, within SMa0945 at 528.314 kb on + strand, within SMa0945 at 528.314 kb on + strand, within SMa0945 at 528.315 kb on - strand, within SMa0945 at 528.315 kb on - strand, within SMa0945 at 528.360 kb on + strand, within SMa0945 at 528.473 kb on - strand, within SMa0945 at 528.473 kb on - strand, within SMa0945 at 528.495 kb on - strand, within SMa0945 at 528.600 kb on + strand, within SMa0945 at 528.600 kb on + strand, within SMa0945 at 528.600 kb on + strand, within SMa0945 at 528.600 kb on + strand, within SMa0945 at 528.600 kb on + strand, within SMa0945 at 528.601 kb on - strand at 528.601 kb on - strand, within SMa0945 at 528.601 kb on - strand, within SMa0945 at 528.632 kb on + strand, within SMa0945 at 528.632 kb on + strand, within SMa0945 at 528.632 kb on + strand, within SMa0945 at 528.633 kb on - strand, within SMa0945 at 528.747 kb on + strand at 528.748 kb on - strand at 528.847 kb on + strand at 528.847 kb on + strand at 528.848 kb on - strand at 529.029 kb on + strand at 529.101 kb on + strand at 529.272 kb on + strand, within SMa0947 at 529.431 kb on + strand, within SMa0947 at 529.701 kb on + strand at 529.702 kb on - strand at 529.702 kb on - strand at 529.702 kb on - strand at 529.721 kb on - strand at 529.721 kb on - strand at 529.861 kb on + strand at 529.943 kb on + strand, within SMa0950 at 529.944 kb on - strand, within SMa0950 at 530.081 kb on - strand, within SMa0950 at 530.081 kb on - strand, within SMa0950 at 530.081 kb on - strand, within SMa0950 at 530.162 kb on + strand, within SMa0950 at 530.375 kb on + strand, within SMa0950 at 530.423 kb on - strand, within SMa0950
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 528,250 + SMa0945 0.14 -0.4 528,268 + SMa0945 0.17 -0.7 528,269 - SMa0945 0.17 -2.8 528,274 + SMa0945 0.18 +0.3 528,314 + SMa0945 0.25 +0.4 528,314 + SMa0945 0.25 -0.9 528,314 + SMa0945 0.25 -0.4 528,314 + SMa0945 0.25 -2.4 528,315 - SMa0945 0.25 +0.5 528,315 - SMa0945 0.25 +0.7 528,360 + SMa0945 0.33 -0.1 528,473 - SMa0945 0.53 -0.3 528,473 - SMa0945 0.53 +0.2 528,495 - SMa0945 0.57 -1.0 528,600 + SMa0945 0.75 -0.1 528,600 + SMa0945 0.75 -0.0 528,600 + SMa0945 0.75 +0.6 528,600 + SMa0945 0.75 +0.8 528,600 + SMa0945 0.75 -0.6 528,601 - +1.1 528,601 - SMa0945 0.75 +0.9 528,601 - SMa0945 0.75 -0.3 528,632 + SMa0945 0.80 -2.2 528,632 + SMa0945 0.80 +3.5 528,632 + SMa0945 0.80 -2.9 528,633 - SMa0945 0.81 -0.3 528,747 + -1.4 528,748 - +1.7 528,847 + -1.5 528,847 + -0.3 528,848 - -1.8 529,029 + -0.2 529,101 + -0.7 529,272 + SMa0947 0.39 -1.6 529,431 + SMa0947 0.89 -0.8 529,701 + +0.4 529,702 - +0.3 529,702 - -0.9 529,702 - +1.3 529,721 - +0.9 529,721 - -0.0 529,861 + +0.2 529,943 + SMa0950 0.15 -0.6 529,944 - SMa0950 0.15 -1.5 530,081 - SMa0950 0.28 -0.4 530,081 - SMa0950 0.28 +0.4 530,081 - SMa0950 0.28 -0.6 530,162 + SMa0950 0.35 +1.1 530,375 + SMa0950 0.55 -0.7 530,423 - SMa0950 0.60 +1.0
Or see this region's nucleotide sequence