Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0160 and SMa0162 are separated by 184 nucleotides SMa0162 and SMa0163 overlap by 197 nucleotides SMa0163 and SMa0164 overlap by 4 nucleotides SMa0164 and SMa0166 are separated by 21 nucleotides SMa0166 and SMa0168 are separated by 83 nucleotides
SMa0160: SMa0160 - GntR family transcriptional regulator, at 88,416 to 89,090
SMa0160
SMa0162: SMa0162 - hypothetical protein, at 89,275 to 89,520
SMa0162
SMa0163: SMa0163 - PilQ2 pilus assembly protein, at 89,324 to 90,724
SMa0163
SMa0164: SMa0164 - hypothetical protein, at 90,721 to 91,017
SMa0164
SMa0166: SMa0166 - hypothetical protein, at 91,039 to 91,569
SMa0166
SMa0168: SMa0168 - hypothetical protein, at 91,653 to 92,465
SMa0168
Position (kb) 89
90
91 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 88.330 kb on - strand at 88.434 kb on + strand at 88.469 kb on - strand at 88.532 kb on - strand, within SMa0160 at 88.707 kb on - strand, within SMa0160 at 88.789 kb on - strand, within SMa0160 at 88.789 kb on - strand, within SMa0160 at 88.789 kb on - strand, within SMa0160 at 88.804 kb on + strand, within SMa0160 at 88.804 kb on + strand, within SMa0160 at 88.820 kb on - strand, within SMa0160 at 88.822 kb on - strand, within SMa0160 at 88.822 kb on - strand, within SMa0160 at 88.977 kb on - strand, within SMa0160 at 88.977 kb on - strand, within SMa0160 at 89.044 kb on + strand at 89.045 kb on - strand at 89.088 kb on + strand at 89.122 kb on + strand at 89.123 kb on - strand at 89.128 kb on - strand at 89.128 kb on - strand at 89.137 kb on + strand at 89.195 kb on - strand at 89.195 kb on - strand at 89.270 kb on + strand at 89.270 kb on + strand at 89.271 kb on - strand at 89.570 kb on + strand, within SMa0163 at 89.570 kb on + strand, within SMa0163 at 89.571 kb on - strand, within SMa0163 at 89.571 kb on - strand, within SMa0163 at 89.571 kb on - strand, within SMa0163 at 89.641 kb on + strand, within SMa0163 at 89.649 kb on + strand, within SMa0163 at 89.649 kb on + strand, within SMa0163 at 89.649 kb on + strand, within SMa0163 at 89.650 kb on - strand, within SMa0163 at 89.650 kb on - strand, within SMa0163 at 89.715 kb on + strand, within SMa0163 at 89.716 kb on - strand, within SMa0163 at 89.722 kb on - strand, within SMa0163 at 89.780 kb on - strand, within SMa0163 at 89.839 kb on + strand, within SMa0163 at 89.840 kb on - strand, within SMa0163 at 89.862 kb on + strand, within SMa0163 at 89.862 kb on + strand, within SMa0163 at 89.862 kb on + strand, within SMa0163 at 89.936 kb on + strand, within SMa0163 at 89.992 kb on + strand, within SMa0163 at 90.036 kb on - strand, within SMa0163 at 90.109 kb on - strand, within SMa0163 at 90.188 kb on - strand, within SMa0163 at 90.197 kb on + strand, within SMa0163 at 90.197 kb on + strand, within SMa0163 at 90.198 kb on - strand, within SMa0163 at 90.199 kb on + strand, within SMa0163 at 90.320 kb on - strand at 90.491 kb on + strand, within SMa0163 at 90.492 kb on - strand, within SMa0163 at 90.940 kb on + strand, within SMa0164 at 90.940 kb on + strand, within SMa0164 at 90.941 kb on - strand, within SMa0164 at 90.941 kb on - strand, within SMa0164 at 90.942 kb on + strand, within SMa0164 at 90.943 kb on - strand, within SMa0164 at 90.943 kb on - strand, within SMa0164 at 91.016 kb on - strand at 91.016 kb on - strand at 91.016 kb on - strand at 91.354 kb on + strand, within SMa0166 at 91.354 kb on + strand, within SMa0166 at 91.354 kb on + strand, within SMa0166 at 91.354 kb on + strand, within SMa0166 at 91.355 kb on - strand, within SMa0166 at 91.355 kb on - strand, within SMa0166 at 91.659 kb on - strand at 91.723 kb on - strand at 91.723 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 88,330 - -1.2 88,434 + +0.6 88,469 - +2.6 88,532 - SMa0160 0.17 -0.8 88,707 - SMa0160 0.43 -0.0 88,789 - SMa0160 0.55 +0.3 88,789 - SMa0160 0.55 +0.4 88,789 - SMa0160 0.55 +1.8 88,804 + SMa0160 0.57 +0.4 88,804 + SMa0160 0.57 -0.4 88,820 - SMa0160 0.60 +0.4 88,822 - SMa0160 0.60 -1.8 88,822 - SMa0160 0.60 -0.6 88,977 - SMa0160 0.83 +1.1 88,977 - SMa0160 0.83 -0.1 89,044 + +1.9 89,045 - +0.1 89,088 + +0.6 89,122 + +1.0 89,123 - -0.9 89,128 - -0.3 89,128 - -1.0 89,137 + -0.9 89,195 - -2.0 89,195 - +0.8 89,270 + -2.2 89,270 + -0.8 89,271 - -0.6 89,570 + SMa0163 0.18 -2.8 89,570 + SMa0163 0.18 +0.3 89,571 - SMa0163 0.18 -0.9 89,571 - SMa0163 0.18 +2.3 89,571 - SMa0163 0.18 -1.5 89,641 + SMa0163 0.23 +0.7 89,649 + SMa0163 0.23 -3.6 89,649 + SMa0163 0.23 +0.5 89,649 + SMa0163 0.23 -0.4 89,650 - SMa0163 0.23 +0.5 89,650 - SMa0163 0.23 -1.1 89,715 + SMa0163 0.28 -1.6 89,716 - SMa0163 0.28 -0.5 89,722 - SMa0163 0.28 +0.2 89,780 - SMa0163 0.33 -0.2 89,839 + SMa0163 0.37 +0.0 89,840 - SMa0163 0.37 +0.4 89,862 + SMa0163 0.38 +0.6 89,862 + SMa0163 0.38 +0.4 89,862 + SMa0163 0.38 +0.5 89,936 + SMa0163 0.44 +0.6 89,992 + SMa0163 0.48 -0.3 90,036 - SMa0163 0.51 +0.3 90,109 - SMa0163 0.56 -0.1 90,188 - SMa0163 0.62 +1.0 90,197 + SMa0163 0.62 +0.1 90,197 + SMa0163 0.62 -0.1 90,198 - SMa0163 0.62 +0.4 90,199 + SMa0163 0.62 +0.1 90,320 - -0.1 90,491 + SMa0163 0.83 +0.3 90,492 - SMa0163 0.83 +0.1 90,940 + SMa0164 0.74 +0.3 90,940 + SMa0164 0.74 -2.0 90,941 - SMa0164 0.74 -1.5 90,941 - SMa0164 0.74 +0.4 90,942 + SMa0164 0.74 +0.3 90,943 - SMa0164 0.75 +0.3 90,943 - SMa0164 0.75 -1.2 91,016 - +0.1 91,016 - -0.0 91,016 - +1.0 91,354 + SMa0166 0.59 -1.2 91,354 + SMa0166 0.59 +1.6 91,354 + SMa0166 0.59 +1.0 91,354 + SMa0166 0.59 +0.9 91,355 - SMa0166 0.60 +0.2 91,355 - SMa0166 0.60 +1.5 91,659 - -0.3 91,723 - -0.1 91,723 - +1.6
Or see this region's nucleotide sequence