Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0081 and SMa0082 are separated by 29 nucleotides SMa0082 and SMa0083 are separated by 15 nucleotides SMa0083 and SMa0085 are separated by 17 nucleotides SMa0085 and SMa0087 are separated by 16 nucleotides
SMa0081: SMa0081 - ABC transporter permease, at 42,785 to 43,441
SMa0081
SMa0082: SMa0082 - ABC transporter substrate-binding protein, at 43,471 to 44,286
SMa0082
SMa0083: SMa0083 - ABC transporter ATP-binding protein, at 44,302 to 45,081
SMa0083
SMa0085: SMa0085 - dehydrogenase, at 45,099 to 46,052
SMa0085
SMa0087: SMa0087 - hypothetical protein, at 46,069 to 46,401
SMa0087
Position (kb) 44
45
46 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 43.364 kb on + strand, within SMa0081 at 43.365 kb on - strand, within SMa0081 at 43.470 kb on + strand at 43.487 kb on + strand at 43.488 kb on - strand at 43.494 kb on + strand at 43.494 kb on + strand at 43.495 kb on - strand at 43.500 kb on + strand at 43.501 kb on - strand at 43.508 kb on + strand at 43.508 kb on + strand at 43.508 kb on + strand at 43.508 kb on + strand at 43.509 kb on - strand at 43.509 kb on - strand at 43.514 kb on + strand at 43.514 kb on + strand at 43.514 kb on + strand at 43.514 kb on + strand at 43.515 kb on - strand at 43.515 kb on - strand at 43.596 kb on + strand, within SMa0082 at 43.756 kb on + strand, within SMa0082 at 43.756 kb on + strand, within SMa0082 at 43.843 kb on + strand, within SMa0082 at 43.852 kb on - strand, within SMa0082 at 44.285 kb on - strand at 44.378 kb on + strand at 44.379 kb on - strand at 44.379 kb on - strand at 44.379 kb on - strand at 44.389 kb on + strand, within SMa0083 at 44.389 kb on + strand, within SMa0083 at 44.389 kb on + strand, within SMa0083 at 44.389 kb on + strand, within SMa0083 at 44.389 kb on + strand, within SMa0083 at 44.390 kb on - strand, within SMa0083 at 45.097 kb on - strand at 45.097 kb on - strand at 45.097 kb on - strand at 45.127 kb on + strand at 45.127 kb on + strand at 45.127 kb on + strand at 45.128 kb on - strand at 45.128 kb on - strand at 45.137 kb on - strand at 45.137 kb on - strand at 45.199 kb on - strand, within SMa0085 at 45.518 kb on - strand, within SMa0085 at 45.556 kb on + strand, within SMa0085 at 45.786 kb on - strand, within SMa0085 at 45.794 kb on - strand, within SMa0085 at 45.929 kb on + strand, within SMa0085
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 43,364 + SMa0081 0.88 +0.0 43,365 - SMa0081 0.88 -0.8 43,470 + -0.5 43,487 + -0.4 43,488 - +0.1 43,494 + +0.9 43,494 + +0.2 43,495 - -0.6 43,500 + +0.4 43,501 - +1.4 43,508 + -2.1 43,508 + -1.1 43,508 + -1.6 43,508 + -0.3 43,509 - +0.6 43,509 - -0.2 43,514 + -1.2 43,514 + +1.3 43,514 + -0.1 43,514 + -0.1 43,515 - -3.2 43,515 - -0.6 43,596 + SMa0082 0.15 +2.3 43,756 + SMa0082 0.35 -1.6 43,756 + SMa0082 0.35 +1.5 43,843 + SMa0082 0.46 -1.1 43,852 - SMa0082 0.47 +0.1 44,285 - -1.3 44,378 + -0.4 44,379 - -0.1 44,379 - -0.2 44,379 - +2.4 44,389 + SMa0083 0.11 -2.1 44,389 + SMa0083 0.11 +0.7 44,389 + SMa0083 0.11 -2.1 44,389 + SMa0083 0.11 +2.4 44,389 + SMa0083 0.11 +0.5 44,390 - SMa0083 0.11 +0.8 45,097 - +0.1 45,097 - +0.4 45,097 - -0.4 45,127 + +1.0 45,127 + +0.1 45,127 + +0.1 45,128 - +0.1 45,128 - -0.6 45,137 - +0.2 45,137 - +0.1 45,199 - SMa0085 0.10 +1.0 45,518 - SMa0085 0.44 -1.5 45,556 + SMa0085 0.48 +0.9 45,786 - SMa0085 0.72 -1.5 45,794 - SMa0085 0.73 -2.2 45,929 + SMa0085 0.87 +0.3
Or see this region's nucleotide sequence