Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0077 and SMa0078 are separated by 241 nucleotides SMa0078 and SMa0079 are separated by 124 nucleotides SMa0079 and SMa0081 are separated by 10 nucleotides
SMa0077: SMa0077 - hypothetical protein, at 39,830 to 40,717
SMa0077
SMa0078: SMa0078 - LacI family transcriptional regulator, at 40,959 to 41,981
SMa0078
SMa0079: SMa0079 - ABC transporter permease, at 42,106 to 42,774
SMa0079
SMa0081: SMa0081 - ABC transporter permease, at 42,785 to 43,441
SMa0081
Position (kb) 40
41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 40.083 kb on + strand, within SMa0077 at 40.083 kb on + strand, within SMa0077 at 40.084 kb on - strand, within SMa0077 at 40.084 kb on - strand, within SMa0077 at 40.084 kb on - strand, within SMa0077 at 40.084 kb on - strand, within SMa0077 at 40.084 kb on - strand, within SMa0077 at 40.209 kb on - strand, within SMa0077 at 40.216 kb on - strand, within SMa0077 at 40.392 kb on + strand, within SMa0077 at 40.547 kb on + strand, within SMa0077 at 40.547 kb on + strand, within SMa0077 at 40.620 kb on + strand, within SMa0077 at 40.847 kb on + strand at 40.921 kb on + strand at 40.921 kb on + strand at 40.922 kb on - strand at 40.922 kb on - strand at 40.924 kb on - strand at 40.924 kb on - strand at 41.118 kb on + strand, within SMa0078 at 41.119 kb on - strand, within SMa0078 at 41.119 kb on - strand, within SMa0078 at 41.119 kb on - strand, within SMa0078 at 41.119 kb on - strand, within SMa0078 at 41.124 kb on + strand, within SMa0078 at 41.124 kb on + strand, within SMa0078 at 41.124 kb on + strand, within SMa0078 at 41.124 kb on + strand, within SMa0078 at 41.125 kb on - strand, within SMa0078 at 41.125 kb on - strand, within SMa0078 at 41.274 kb on - strand, within SMa0078 at 41.389 kb on + strand, within SMa0078 at 41.390 kb on - strand, within SMa0078 at 41.419 kb on + strand, within SMa0078 at 41.448 kb on + strand, within SMa0078 at 41.448 kb on + strand, within SMa0078 at 41.448 kb on + strand, within SMa0078 at 41.448 kb on + strand, within SMa0078 at 41.448 kb on + strand, within SMa0078 at 41.449 kb on - strand, within SMa0078 at 41.463 kb on + strand, within SMa0078 at 41.464 kb on - strand, within SMa0078 at 41.685 kb on - strand, within SMa0078 at 41.685 kb on - strand, within SMa0078 at 41.939 kb on + strand at 42.109 kb on + strand at 42.109 kb on + strand at 42.110 kb on - strand at 42.270 kb on - strand, within SMa0079 at 42.280 kb on + strand, within SMa0079 at 42.280 kb on + strand, within SMa0079 at 42.412 kb on + strand, within SMa0079 at 42.412 kb on + strand, within SMa0079 at 42.413 kb on - strand, within SMa0079 at 42.413 kb on - strand, within SMa0079 at 42.453 kb on + strand, within SMa0079 at 42.454 kb on - strand, within SMa0079 at 42.464 kb on + strand, within SMa0079 at 42.569 kb on + strand, within SMa0079 at 42.569 kb on + strand, within SMa0079 at 42.570 kb on - strand, within SMa0079 at 42.570 kb on - strand, within SMa0079 at 42.571 kb on + strand, within SMa0079 at 42.571 kb on + strand, within SMa0079 at 42.572 kb on - strand, within SMa0079 at 42.572 kb on - strand, within SMa0079 at 42.572 kb on - strand, within SMa0079 at 42.572 kb on - strand, within SMa0079 at 42.572 kb on - strand, within SMa0079 at 42.572 kb on - strand, within SMa0079 at 42.673 kb on + strand, within SMa0079 at 42.673 kb on + strand, within SMa0079 at 42.673 kb on + strand, within SMa0079 at 42.673 kb on + strand, within SMa0079 at 42.673 kb on + strand, within SMa0079 at 42.673 kb on + strand, within SMa0079 at 42.674 kb on - strand, within SMa0079 at 42.674 kb on - strand at 42.674 kb on - strand, within SMa0079 at 42.675 kb on + strand, within SMa0079 at 42.676 kb on - strand, within SMa0079
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 40,083 + SMa0077 0.28 -1.2 40,083 + SMa0077 0.28 -1.3 40,084 - SMa0077 0.29 +0.2 40,084 - SMa0077 0.29 -3.1 40,084 - SMa0077 0.29 +1.9 40,084 - SMa0077 0.29 -2.4 40,084 - SMa0077 0.29 -0.3 40,209 - SMa0077 0.43 -0.2 40,216 - SMa0077 0.43 -0.5 40,392 + SMa0077 0.63 +0.8 40,547 + SMa0077 0.81 -0.8 40,547 + SMa0077 0.81 -0.5 40,620 + SMa0077 0.89 +0.9 40,847 + +0.8 40,921 + +1.8 40,921 + -2.2 40,922 - -0.2 40,922 - -0.3 40,924 - -0.4 40,924 - -0.6 41,118 + SMa0078 0.16 -0.7 41,119 - SMa0078 0.16 +1.2 41,119 - SMa0078 0.16 +0.9 41,119 - SMa0078 0.16 -1.2 41,119 - SMa0078 0.16 -0.2 41,124 + SMa0078 0.16 -0.4 41,124 + SMa0078 0.16 +0.4 41,124 + SMa0078 0.16 -2.3 41,124 + SMa0078 0.16 -1.2 41,125 - SMa0078 0.16 -1.4 41,125 - SMa0078 0.16 -0.9 41,274 - SMa0078 0.31 -0.7 41,389 + SMa0078 0.42 -2.5 41,390 - SMa0078 0.42 -0.6 41,419 + SMa0078 0.45 -0.1 41,448 + SMa0078 0.48 +0.3 41,448 + SMa0078 0.48 -2.0 41,448 + SMa0078 0.48 -1.6 41,448 + SMa0078 0.48 -0.1 41,448 + SMa0078 0.48 -1.5 41,449 - SMa0078 0.48 -2.6 41,463 + SMa0078 0.49 -1.1 41,464 - SMa0078 0.49 -1.8 41,685 - SMa0078 0.71 -1.6 41,685 - SMa0078 0.71 -3.5 41,939 + -0.8 42,109 + -0.0 42,109 + +0.9 42,110 - +1.0 42,270 - SMa0079 0.25 -0.1 42,280 + SMa0079 0.26 -1.3 42,280 + SMa0079 0.26 -1.1 42,412 + SMa0079 0.46 +0.8 42,412 + SMa0079 0.46 -2.6 42,413 - SMa0079 0.46 +1.8 42,413 - SMa0079 0.46 +0.8 42,453 + SMa0079 0.52 -1.2 42,454 - SMa0079 0.52 +0.9 42,464 + SMa0079 0.54 +1.9 42,569 + SMa0079 0.69 -1.3 42,569 + SMa0079 0.69 -0.2 42,570 - SMa0079 0.69 +0.2 42,570 - SMa0079 0.69 -0.5 42,571 + SMa0079 0.70 +0.1 42,571 + SMa0079 0.70 +0.5 42,572 - SMa0079 0.70 -0.4 42,572 - SMa0079 0.70 +1.4 42,572 - SMa0079 0.70 +0.3 42,572 - SMa0079 0.70 +0.5 42,572 - SMa0079 0.70 -0.6 42,572 - SMa0079 0.70 -2.1 42,673 + SMa0079 0.85 +1.1 42,673 + SMa0079 0.85 -0.2 42,673 + SMa0079 0.85 +0.3 42,673 + SMa0079 0.85 +0.5 42,673 + SMa0079 0.85 +0.1 42,673 + SMa0079 0.85 -1.9 42,674 - SMa0079 0.85 -1.9 42,674 - -0.1 42,674 - SMa0079 0.85 +0.1 42,675 + SMa0079 0.85 -0.8 42,676 - SMa0079 0.85 -1.1
Or see this region's nucleotide sequence