Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21152 and SM_b21153 are separated by 2 nucleotides SM_b21153 and SM_b21154 are separated by 150 nucleotides SM_b21154 and SM_b21155 are separated by 80 nucleotides
SM_b21152: SM_b21152 - sugar uptake ABC transporter ATP-binding protein, at 896,873 to 898,006
_b21152
SM_b21153: SM_b21153 - acetyltransferase, at 898,009 to 898,509
_b21153
SM_b21154: SM_b21154 - hypothetical protein, at 898,660 to 899,043
_b21154
SM_b21155: SM_b21155 - hypothetical protein, at 899,124 to 900,617
_b21155
Position (kb) 898
899 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 897.122 kb on + strand, within SM_b21152 at 897.122 kb on + strand, within SM_b21152 at 897.122 kb on + strand, within SM_b21152 at 897.123 kb on - strand, within SM_b21152 at 897.123 kb on - strand, within SM_b21152 at 897.123 kb on - strand, within SM_b21152 at 897.131 kb on + strand, within SM_b21152 at 897.139 kb on + strand, within SM_b21152 at 897.232 kb on - strand, within SM_b21152 at 897.232 kb on - strand, within SM_b21152 at 897.437 kb on + strand, within SM_b21152 at 897.437 kb on + strand, within SM_b21152 at 897.537 kb on - strand, within SM_b21152 at 897.537 kb on - strand, within SM_b21152 at 897.553 kb on + strand, within SM_b21152 at 897.554 kb on - strand, within SM_b21152 at 897.555 kb on + strand, within SM_b21152 at 897.555 kb on + strand, within SM_b21152 at 897.555 kb on + strand, within SM_b21152 at 897.556 kb on - strand, within SM_b21152 at 897.644 kb on + strand, within SM_b21152 at 897.644 kb on + strand, within SM_b21152 at 897.644 kb on + strand, within SM_b21152 at 897.706 kb on - strand, within SM_b21152 at 897.777 kb on + strand, within SM_b21152 at 897.809 kb on + strand, within SM_b21152 at 897.810 kb on - strand, within SM_b21152 at 897.810 kb on - strand, within SM_b21152 at 897.839 kb on + strand, within SM_b21152 at 897.839 kb on + strand, within SM_b21152 at 897.840 kb on - strand, within SM_b21152 at 897.840 kb on - strand, within SM_b21152 at 898.004 kb on + strand at 898.005 kb on - strand at 898.270 kb on + strand, within SM_b21153 at 898.271 kb on - strand, within SM_b21153 at 898.687 kb on + strand at 898.687 kb on + strand at 898.687 kb on + strand at 898.687 kb on + strand at 898.687 kb on + strand at 898.688 kb on - strand at 898.688 kb on - strand at 898.688 kb on - strand at 898.688 kb on - strand at 898.688 kb on - strand at 898.688 kb on - strand at 899.015 kb on + strand at 899.015 kb on + strand at 899.015 kb on + strand at 899.116 kb on + strand at 899.117 kb on - strand at 899.239 kb on + strand at 899.240 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 897,122 + SM_b21152 0.22 +1.0 897,122 + SM_b21152 0.22 -1.1 897,122 + SM_b21152 0.22 -1.7 897,123 - SM_b21152 0.22 -1.4 897,123 - SM_b21152 0.22 -1.4 897,123 - SM_b21152 0.22 +0.3 897,131 + SM_b21152 0.23 -0.8 897,139 + SM_b21152 0.23 +0.1 897,232 - SM_b21152 0.32 -0.1 897,232 - SM_b21152 0.32 -1.0 897,437 + SM_b21152 0.50 -0.8 897,437 + SM_b21152 0.50 -2.5 897,537 - SM_b21152 0.59 -0.3 897,537 - SM_b21152 0.59 +0.2 897,553 + SM_b21152 0.60 +0.2 897,554 - SM_b21152 0.60 +0.7 897,555 + SM_b21152 0.60 -1.4 897,555 + SM_b21152 0.60 -0.5 897,555 + SM_b21152 0.60 -2.2 897,556 - SM_b21152 0.60 +0.3 897,644 + SM_b21152 0.68 -1.9 897,644 + SM_b21152 0.68 +1.1 897,644 + SM_b21152 0.68 -1.7 897,706 - SM_b21152 0.73 +0.2 897,777 + SM_b21152 0.80 +1.8 897,809 + SM_b21152 0.83 +0.2 897,810 - SM_b21152 0.83 +3.5 897,810 - SM_b21152 0.83 +0.5 897,839 + SM_b21152 0.85 -1.2 897,839 + SM_b21152 0.85 +0.8 897,840 - SM_b21152 0.85 +0.3 897,840 - SM_b21152 0.85 -1.5 898,004 + -1.6 898,005 - +0.0 898,270 + SM_b21153 0.52 +1.1 898,271 - SM_b21153 0.52 -1.6 898,687 + +1.2 898,687 + -3.9 898,687 + -1.9 898,687 + -0.8 898,687 + -1.1 898,688 - -0.2 898,688 - -0.4 898,688 - -2.0 898,688 - -0.7 898,688 - -2.4 898,688 - -0.7 899,015 + +1.2 899,015 + -2.0 899,015 + -0.9 899,116 + +0.7 899,117 - -2.7 899,239 + +0.6 899,240 - -0.6
Or see this region's nucleotide sequence