Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21101

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21100 and SM_b21101 are separated by 257 nucleotidesSM_b21101 and SM_b21102 are separated by 50 nucleotides SM_b21100: SM_b21100 - polysaccharide deacetylase, at 742,000 to 742,878 _b21100 SM_b21101: SM_b21101 - L-fucono-1,5-lactonase; D-arabinolactonase (from data), at 743,136 to 743,972 _b21101 SM_b21102: SM_b21102 - transcriptional regulator, at 744,023 to 744,805 _b21102 Position (kb) 743 744Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 742.178 kb on - strand, within SM_b21100at 742.291 kb on - strand, within SM_b21100at 742.478 kb on - strand, within SM_b21100at 742.478 kb on - strand, within SM_b21100at 742.887 kb on - strandat 742.915 kb on + strandat 742.945 kb on + strandat 742.946 kb on - strandat 742.976 kb on + strandat 742.976 kb on + strandat 742.976 kb on + strandat 742.977 kb on - strandat 743.061 kb on + strandat 743.061 kb on + strandat 743.061 kb on + strandat 743.134 kb on + strandat 743.134 kb on + strandat 743.135 kb on - strandat 743.327 kb on - strand, within SM_b21101at 743.327 kb on - strand, within SM_b21101at 743.366 kb on - strand, within SM_b21101at 743.423 kb on + strand, within SM_b21101at 743.424 kb on - strand, within SM_b21101at 743.457 kb on + strand, within SM_b21101at 743.457 kb on + strand, within SM_b21101at 743.458 kb on - strand, within SM_b21101at 743.458 kb on - strand, within SM_b21101at 743.522 kb on + strand, within SM_b21101at 743.522 kb on + strand, within SM_b21101at 743.693 kb on - strand, within SM_b21101at 743.826 kb on - strand, within SM_b21101at 743.869 kb on + strand, within SM_b21101at 743.878 kb on + strand, within SM_b21101at 743.923 kb on + strandat 743.924 kb on - strandat 744.136 kb on + strand, within SM_b21102at 744.136 kb on + strand, within SM_b21102at 744.136 kb on + strand, within SM_b21102at 744.136 kb on + strand, within SM_b21102at 744.136 kb on + strand, within SM_b21102at 744.137 kb on - strand, within SM_b21102at 744.137 kb on - strand, within SM_b21102at 744.137 kb on - strand, within SM_b21102at 744.138 kb on + strand, within SM_b21102at 744.138 kb on + strand, within SM_b21102at 744.138 kb on + strand, within SM_b21102at 744.138 kb on + strand, within SM_b21102at 744.138 kb on + strand, within SM_b21102at 744.138 kb on + strand, within SM_b21102at 744.201 kb on + strand, within SM_b21102at 744.202 kb on - strand, within SM_b21102at 744.202 kb on - strand, within SM_b21102at 744.202 kb on - strand, within SM_b21102at 744.238 kb on - strand, within SM_b21102at 744.270 kb on + strand, within SM_b21102at 744.270 kb on + strand, within SM_b21102at 744.271 kb on - strand, within SM_b21102at 744.395 kb on - strand, within SM_b21102at 744.603 kb on + strand, within SM_b21102at 744.630 kb on + strand, within SM_b21102at 744.630 kb on + strand, within SM_b21102at 744.631 kb on - strand, within SM_b21102at 744.970 kb on - strandat 744.970 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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742,178 - SM_b21100 0.20 -2.4
742,291 - SM_b21100 0.33 +1.9
742,478 - SM_b21100 0.54 -0.2
742,478 - SM_b21100 0.54 -2.5
742,887 - -2.6
742,915 + -2.4
742,945 + +0.2
742,946 - +0.3
742,976 + -0.1
742,976 + +1.5
742,976 + -0.4
742,977 - +0.8
743,061 + -3.0
743,061 + -0.2
743,061 + +0.3
743,134 + -0.0
743,134 + -0.4
743,135 - -0.7
743,327 - SM_b21101 0.23 -0.2
743,327 - SM_b21101 0.23 +1.1
743,366 - SM_b21101 0.27 +1.9
743,423 + SM_b21101 0.34 +2.4
743,424 - SM_b21101 0.34 -0.7
743,457 + SM_b21101 0.38 +0.5
743,457 + SM_b21101 0.38 +0.1
743,458 - SM_b21101 0.38 -0.9
743,458 - SM_b21101 0.38 +1.1
743,522 + SM_b21101 0.46 -1.2
743,522 + SM_b21101 0.46 +1.3
743,693 - SM_b21101 0.67 +0.4
743,826 - SM_b21101 0.82 -0.0
743,869 + SM_b21101 0.88 +1.4
743,878 + SM_b21101 0.89 -2.8
743,923 + +0.3
743,924 - -0.4
744,136 + SM_b21102 0.14 +2.2
744,136 + SM_b21102 0.14 -0.2
744,136 + SM_b21102 0.14 -0.5
744,136 + SM_b21102 0.14 +2.0
744,136 + SM_b21102 0.14 +0.7
744,137 - SM_b21102 0.15 -1.4
744,137 - SM_b21102 0.15 +0.6
744,137 - SM_b21102 0.15 +1.9
744,138 + SM_b21102 0.15 +0.4
744,138 + SM_b21102 0.15 +0.1
744,138 + SM_b21102 0.15 -3.2
744,138 + SM_b21102 0.15 -2.4
744,138 + SM_b21102 0.15 +0.9
744,138 + SM_b21102 0.15 +0.2
744,201 + SM_b21102 0.23 -0.3
744,202 - SM_b21102 0.23 -0.7
744,202 - SM_b21102 0.23 +1.8
744,202 - SM_b21102 0.23 +0.1
744,238 - SM_b21102 0.27 +0.9
744,270 + SM_b21102 0.32 +0.3
744,270 + SM_b21102 0.32 +2.4
744,271 - SM_b21102 0.32 +1.9
744,395 - SM_b21102 0.48 -3.4
744,603 + SM_b21102 0.74 +0.1
744,630 + SM_b21102 0.78 -0.1
744,630 + SM_b21102 0.78 +0.5
744,631 - SM_b21102 0.78 -1.7
744,970 - -0.1
744,970 - +1.4

Or see this region's nucleotide sequence