Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21040 and SM_b21041 are separated by 87 nucleotides SM_b21041 and SM_b21042 are separated by 116 nucleotides
SM_b21040: SM_b21040 - oligopeptidemurein peptide ABC transporter ATP-binding protein, at 658,113 to 659,786
_b21040
SM_b21041: SM_b21041 - hypothetical protein, at 659,874 to 661,109
_b21041
SM_b21042: SM_b21042 - peptidase T, at 661,226 to 662,467
_b21042
Position (kb) 659
660
661
662 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 658.882 kb on - strand, within SM_b21040 at 658.978 kb on + strand, within SM_b21040 at 658.979 kb on - strand, within SM_b21040 at 659.484 kb on - strand, within SM_b21040 at 659.667 kb on + strand at 659.668 kb on - strand at 659.668 kb on - strand at 659.668 kb on - strand at 659.668 kb on - strand at 659.740 kb on - strand at 659.780 kb on - strand at 659.854 kb on - strand at 659.854 kb on - strand at 660.315 kb on + strand, within SM_b21041 at 660.316 kb on - strand, within SM_b21041 at 660.316 kb on - strand, within SM_b21041 at 660.316 kb on - strand, within SM_b21041 at 660.416 kb on + strand, within SM_b21041 at 660.416 kb on + strand, within SM_b21041 at 660.442 kb on - strand, within SM_b21041 at 660.463 kb on - strand, within SM_b21041 at 660.642 kb on + strand, within SM_b21041 at 660.780 kb on + strand, within SM_b21041 at 660.802 kb on - strand, within SM_b21041 at 660.802 kb on - strand, within SM_b21041 at 660.802 kb on - strand, within SM_b21041 at 660.908 kb on + strand, within SM_b21041 at 660.908 kb on + strand, within SM_b21041 at 660.915 kb on - strand, within SM_b21041 at 660.915 kb on - strand, within SM_b21041 at 660.931 kb on - strand, within SM_b21041 at 661.125 kb on + strand at 661.125 kb on + strand at 661.140 kb on + strand at 661.141 kb on - strand at 661.141 kb on - strand at 661.582 kb on - strand, within SM_b21042 at 661.690 kb on + strand, within SM_b21042 at 661.690 kb on + strand, within SM_b21042 at 661.691 kb on - strand, within SM_b21042
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 658,882 - SM_b21040 0.46 -1.1 658,978 + SM_b21040 0.52 +2.4 658,979 - SM_b21040 0.52 -0.6 659,484 - SM_b21040 0.82 -1.2 659,667 + -0.4 659,668 - -0.8 659,668 - -0.4 659,668 - -1.4 659,668 - -0.2 659,740 - +0.8 659,780 - -0.4 659,854 - -0.9 659,854 - +0.3 660,315 + SM_b21041 0.36 +0.6 660,316 - SM_b21041 0.36 +1.0 660,316 - SM_b21041 0.36 -0.0 660,316 - SM_b21041 0.36 +0.6 660,416 + SM_b21041 0.44 -0.5 660,416 + SM_b21041 0.44 +0.1 660,442 - SM_b21041 0.46 -2.1 660,463 - SM_b21041 0.48 -0.2 660,642 + SM_b21041 0.62 -0.3 660,780 + SM_b21041 0.73 -0.7 660,802 - SM_b21041 0.75 -0.2 660,802 - SM_b21041 0.75 -2.2 660,802 - SM_b21041 0.75 -0.4 660,908 + SM_b21041 0.84 -1.3 660,908 + SM_b21041 0.84 -0.1 660,915 - SM_b21041 0.84 -0.4 660,915 - SM_b21041 0.84 -0.1 660,931 - SM_b21041 0.86 -0.8 661,125 + +1.1 661,125 + -1.3 661,140 + -3.1 661,141 - -0.6 661,141 - -3.3 661,582 - SM_b21042 0.29 +0.8 661,690 + SM_b21042 0.37 -0.2 661,690 + SM_b21042 0.37 -0.5 661,691 - SM_b21042 0.37 -0.5
Or see this region's nucleotide sequence