Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20622

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20621 and SM_b20622 are separated by 79 nucleotidesSM_b20622 and SM_b20623 are separated by 135 nucleotides SM_b20621: SM_b20621 - sugar uptake ABC transporter permease, at 1,640,522 to 1,641,478 _b20621 SM_b20622: SM_b20622 - sugar uptake ABC transporter ATP-binding protein, at 1,641,558 to 1,643,081 _b20622 SM_b20623: SM_b20623 - methylthioribose kinase, at 1,643,217 to 1,644,488 _b20623 Position (kb) 1641 1642 1643 1644Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1640.604 kb on + strandat 1640.604 kb on + strandat 1640.607 kb on + strandat 1640.607 kb on + strandat 1640.607 kb on + strandat 1640.608 kb on - strandat 1640.640 kb on - strand, within SM_b20621at 1640.640 kb on - strand, within SM_b20621at 1640.640 kb on - strand, within SM_b20621at 1640.806 kb on + strand, within SM_b20621at 1640.833 kb on - strand, within SM_b20621at 1640.847 kb on + strand, within SM_b20621at 1640.847 kb on + strand, within SM_b20621at 1640.905 kb on - strand, within SM_b20621at 1640.909 kb on + strand, within SM_b20621at 1640.909 kb on + strand, within SM_b20621at 1640.909 kb on + strand, within SM_b20621at 1640.909 kb on + strand, within SM_b20621at 1640.910 kb on - strand, within SM_b20621at 1640.951 kb on + strand, within SM_b20621at 1641.236 kb on + strand, within SM_b20621at 1641.237 kb on - strand, within SM_b20621at 1641.237 kb on - strand, within SM_b20621at 1641.282 kb on + strand, within SM_b20621at 1641.282 kb on + strand, within SM_b20621at 1641.282 kb on + strand, within SM_b20621at 1641.282 kb on + strand, within SM_b20621at 1641.283 kb on - strand, within SM_b20621at 1641.283 kb on - strand, within SM_b20621at 1641.283 kb on - strand, within SM_b20621at 1641.490 kb on - strandat 1641.975 kb on + strand, within SM_b20622at 1641.976 kb on - strand, within SM_b20622at 1642.024 kb on + strand, within SM_b20622at 1642.025 kb on - strand, within SM_b20622at 1642.025 kb on - strand, within SM_b20622at 1642.120 kb on + strand, within SM_b20622at 1642.210 kb on - strand, within SM_b20622at 1642.378 kb on + strand, within SM_b20622at 1642.378 kb on + strandat 1642.478 kb on + strand, within SM_b20622at 1642.478 kb on + strand, within SM_b20622at 1642.479 kb on - strand, within SM_b20622at 1642.480 kb on + strand, within SM_b20622at 1642.480 kb on + strand, within SM_b20622at 1642.481 kb on - strand, within SM_b20622at 1642.481 kb on - strand, within SM_b20622at 1642.481 kb on - strand, within SM_b20622at 1642.481 kb on - strand, within SM_b20622at 1642.481 kb on - strand, within SM_b20622at 1642.481 kb on - strand, within SM_b20622at 1642.577 kb on + strand, within SM_b20622at 1642.916 kb on - strand, within SM_b20622at 1642.916 kb on - strand, within SM_b20622at 1642.916 kb on - strand, within SM_b20622at 1643.105 kb on + strandat 1643.105 kb on + strandat 1643.106 kb on - strandat 1643.160 kb on + strandat 1643.160 kb on + strandat 1643.161 kb on - strandat 1643.161 kb on - strandat 1643.217 kb on - strandat 1643.412 kb on + strand, within SM_b20623at 1643.412 kb on + strand, within SM_b20623at 1643.413 kb on - strand, within SM_b20623at 1643.413 kb on - strand, within SM_b20623at 1643.563 kb on - strand, within SM_b20623at 1643.563 kb on - strand, within SM_b20623at 1643.621 kb on + strand, within SM_b20623at 1643.623 kb on + strand, within SM_b20623at 1643.623 kb on + strand, within SM_b20623at 1643.623 kb on + strand, within SM_b20623at 1643.623 kb on + strand, within SM_b20623at 1643.623 kb on + strand, within SM_b20623at 1643.623 kb on + strand, within SM_b20623at 1643.623 kb on + strand, within SM_b20623at 1643.623 kb on + strand, within SM_b20623at 1643.623 kb on + strand, within SM_b20623at 1643.624 kb on - strand, within SM_b20623at 1643.624 kb on - strand, within SM_b20623at 1643.624 kb on - strand, within SM_b20623at 1643.968 kb on + strand, within SM_b20623at 1643.969 kb on - strand, within SM_b20623at 1643.988 kb on + strand, within SM_b20623at 1643.989 kb on - strand, within SM_b20623at 1643.989 kb on - strand, within SM_b20623at 1643.989 kb on - strand, within SM_b20623at 1644.042 kb on + strand, within SM_b20623at 1644.042 kb on + strand, within SM_b20623at 1644.043 kb on - strand, within SM_b20623

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,640,604 + -0.3
1,640,604 + -1.2
1,640,607 + +0.2
1,640,607 + +0.3
1,640,607 + -3.3
1,640,608 - -0.9
1,640,640 - SM_b20621 0.12 -1.8
1,640,640 - SM_b20621 0.12 -1.1
1,640,640 - SM_b20621 0.12 -0.1
1,640,806 + SM_b20621 0.30 +0.7
1,640,833 - SM_b20621 0.32 -2.2
1,640,847 + SM_b20621 0.34 -0.6
1,640,847 + SM_b20621 0.34 +0.1
1,640,905 - SM_b20621 0.40 +1.2
1,640,909 + SM_b20621 0.40 +0.4
1,640,909 + SM_b20621 0.40 -3.4
1,640,909 + SM_b20621 0.40 +0.7
1,640,909 + SM_b20621 0.40 -1.5
1,640,910 - SM_b20621 0.41 -1.5
1,640,951 + SM_b20621 0.45 +1.7
1,641,236 + SM_b20621 0.75 -0.6
1,641,237 - SM_b20621 0.75 +0.6
1,641,237 - SM_b20621 0.75 -0.1
1,641,282 + SM_b20621 0.79 -1.7
1,641,282 + SM_b20621 0.79 +0.2
1,641,282 + SM_b20621 0.79 +0.0
1,641,282 + SM_b20621 0.79 -1.5
1,641,283 - SM_b20621 0.80 -2.1
1,641,283 - SM_b20621 0.80 +0.6
1,641,283 - SM_b20621 0.80 +1.0
1,641,490 - +0.8
1,641,975 + SM_b20622 0.27 +1.0
1,641,976 - SM_b20622 0.27 +0.7
1,642,024 + SM_b20622 0.31 +0.4
1,642,025 - SM_b20622 0.31 -0.1
1,642,025 - SM_b20622 0.31 +4.0
1,642,120 + SM_b20622 0.37 +0.4
1,642,210 - SM_b20622 0.43 +1.2
1,642,378 + SM_b20622 0.54 -0.1
1,642,378 + +2.0
1,642,478 + SM_b20622 0.60 +3.3
1,642,478 + SM_b20622 0.60 -1.9
1,642,479 - SM_b20622 0.60 -1.7
1,642,480 + SM_b20622 0.60 +2.4
1,642,480 + SM_b20622 0.60 -0.4
1,642,481 - SM_b20622 0.61 +0.4
1,642,481 - SM_b20622 0.61 +2.0
1,642,481 - SM_b20622 0.61 +1.0
1,642,481 - SM_b20622 0.61 -0.3
1,642,481 - SM_b20622 0.61 +2.7
1,642,481 - SM_b20622 0.61 -2.1
1,642,577 + SM_b20622 0.67 +0.4
1,642,916 - SM_b20622 0.89 +1.5
1,642,916 - SM_b20622 0.89 -0.4
1,642,916 - SM_b20622 0.89 +0.0
1,643,105 + -0.3
1,643,105 + -2.4
1,643,106 - +1.8
1,643,160 + -0.1
1,643,160 + +1.1
1,643,161 - +0.6
1,643,161 - -1.7
1,643,217 - -2.0
1,643,412 + SM_b20623 0.15 -0.4
1,643,412 + SM_b20623 0.15 -0.1
1,643,413 - SM_b20623 0.15 -0.4
1,643,413 - SM_b20623 0.15 -0.1
1,643,563 - SM_b20623 0.27 +0.5
1,643,563 - SM_b20623 0.27 +0.5
1,643,621 + SM_b20623 0.32 -1.7
1,643,623 + SM_b20623 0.32 -0.6
1,643,623 + SM_b20623 0.32 -0.5
1,643,623 + SM_b20623 0.32 -1.5
1,643,623 + SM_b20623 0.32 -3.3
1,643,623 + SM_b20623 0.32 +0.5
1,643,623 + SM_b20623 0.32 +2.0
1,643,623 + SM_b20623 0.32 -0.2
1,643,623 + SM_b20623 0.32 +0.0
1,643,623 + SM_b20623 0.32 -0.3
1,643,624 - SM_b20623 0.32 +0.6
1,643,624 - SM_b20623 0.32 +0.5
1,643,624 - SM_b20623 0.32 -0.6
1,643,968 + SM_b20623 0.59 -0.2
1,643,969 - SM_b20623 0.59 +0.6
1,643,988 + SM_b20623 0.61 -0.4
1,643,989 - SM_b20623 0.61 -0.8
1,643,989 - SM_b20623 0.61 +0.2
1,643,989 - SM_b20623 0.61 -0.9
1,644,042 + SM_b20623 0.65 -0.6
1,644,042 + SM_b20623 0.65 +2.5
1,644,043 - SM_b20623 0.65 -2.9

Or see this region's nucleotide sequence