Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20427

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20426 and SM_b20427 are separated by 170 nucleotidesSM_b20427 and SM_b20428 are separated by 58 nucleotides SM_b20426: SM_b20426 - transcriptional regulator, at 440,994 to 442,274 _b20426 SM_b20427: SM_b20427 - amino acid ABC transporter ATP-binding protein, at 442,445 to 443,230 _b20427 SM_b20428: SM_b20428 - amino acid ABC transporter substrate-binding protein, at 443,289 to 444,140 _b20428 Position (kb) 442 443 444Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 441.473 kb on + strand, within SM_b20426at 441.474 kb on - strand, within SM_b20426at 441.474 kb on - strand, within SM_b20426at 441.474 kb on - strand, within SM_b20426at 441.495 kb on + strand, within SM_b20426at 441.771 kb on + strand, within SM_b20426at 441.771 kb on + strand, within SM_b20426at 441.771 kb on + strand, within SM_b20426at 441.819 kb on + strand, within SM_b20426at 442.653 kb on - strand, within SM_b20427at 442.759 kb on + strand, within SM_b20427at 442.760 kb on - strand, within SM_b20427at 443.228 kb on + strandat 443.441 kb on + strand, within SM_b20428at 443.547 kb on + strand, within SM_b20428at 443.712 kb on + strand, within SM_b20428at 443.712 kb on + strand, within SM_b20428at 443.874 kb on + strand, within SM_b20428at 443.967 kb on + strand, within SM_b20428at 444.078 kb on + strandat 444.139 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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441,473 + SM_b20426 0.37 -1.2
441,474 - SM_b20426 0.37 +0.5
441,474 - SM_b20426 0.37 +0.7
441,474 - SM_b20426 0.37 -0.4
441,495 + SM_b20426 0.39 -0.2
441,771 + SM_b20426 0.61 -0.9
441,771 + SM_b20426 0.61 -1.3
441,771 + SM_b20426 0.61 +0.3
441,819 + SM_b20426 0.64 +0.3
442,653 - SM_b20427 0.26 -0.1
442,759 + SM_b20427 0.40 -0.8
442,760 - SM_b20427 0.40 -4.2
443,228 + -2.4
443,441 + SM_b20428 0.18 +0.2
443,547 + SM_b20428 0.30 +2.0
443,712 + SM_b20428 0.50 +0.3
443,712 + SM_b20428 0.50 +0.6
443,874 + SM_b20428 0.69 -2.3
443,967 + SM_b20428 0.80 -1.1
444,078 + -1.3
444,139 - +0.6

Or see this region's nucleotide sequence