Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20410 and SM_b20411 are separated by 15 nucleotides SM_b20411 and SM_b20412 are separated by 30 nucleotides SM_b20412 and SM_b20413 overlap by 4 nucleotides SM_b20413 and SM_b20414 are separated by 180 nucleotides SM_b20414 and SM_b20415 overlap by 1 nucleotides
SM_b20410: SM_b20410 - glycine-betaine-binding protein, at 425,740 to 426,678
_b20410
SM_b20411: SM_b20411 - hypothetical protein, at 426,694 to 426,942
_b20411
SM_b20412: SM_b20412 - hypothetical protein, at 426,973 to 427,137
_b20412
SM_b20413: SM_b20413 - hypothetical protein, at 427,134 to 427,361
_b20413
SM_b20414: SM_b20414 - hypothetical protein, at 427,542 to 428,015
_b20414
SM_b20415: SM_b20415 - oxidoreductase, at 428,015 to 429,304
_b20415
Position (kb) 427
428
429 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 426.702 kb on + strand at 426.815 kb on + strand, within SM_b20411 at 426.816 kb on - strand, within SM_b20411 at 426.816 kb on - strand, within SM_b20411 at 426.862 kb on - strand, within SM_b20411 at 426.862 kb on - strand, within SM_b20411 at 426.862 kb on - strand, within SM_b20411 at 427.081 kb on + strand, within SM_b20412 at 427.081 kb on + strand, within SM_b20412 at 427.083 kb on + strand, within SM_b20412 at 427.084 kb on - strand, within SM_b20412 at 427.215 kb on + strand, within SM_b20413 at 427.397 kb on + strand at 427.397 kb on + strand at 427.646 kb on - strand, within SM_b20414 at 427.750 kb on + strand, within SM_b20414 at 428.008 kb on + strand at 428.009 kb on - strand at 428.032 kb on + strand at 428.033 kb on - strand at 428.298 kb on + strand, within SM_b20415 at 428.376 kb on + strand, within SM_b20415 at 428.451 kb on - strand, within SM_b20415 at 428.571 kb on + strand, within SM_b20415 at 428.571 kb on + strand, within SM_b20415 at 428.571 kb on + strand, within SM_b20415 at 428.572 kb on - strand, within SM_b20415 at 428.603 kb on + strand, within SM_b20415 at 428.640 kb on + strand, within SM_b20415 at 428.640 kb on + strand, within SM_b20415 at 428.641 kb on - strand, within SM_b20415 at 428.641 kb on - strand, within SM_b20415
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 426,702 + +0.3 426,815 + SM_b20411 0.49 -1.2 426,816 - SM_b20411 0.49 +0.9 426,816 - SM_b20411 0.49 -2.3 426,862 - SM_b20411 0.67 +0.1 426,862 - SM_b20411 0.67 -1.6 426,862 - SM_b20411 0.67 +0.3 427,081 + SM_b20412 0.65 -1.2 427,081 + SM_b20412 0.65 -0.6 427,083 + SM_b20412 0.67 -0.6 427,084 - SM_b20412 0.67 +0.2 427,215 + SM_b20413 0.36 -0.8 427,397 + +1.3 427,397 + +1.2 427,646 - SM_b20414 0.22 -1.0 427,750 + SM_b20414 0.44 -0.0 428,008 + -0.6 428,009 - -0.5 428,032 + +0.5 428,033 - +0.2 428,298 + SM_b20415 0.22 +0.2 428,376 + SM_b20415 0.28 -1.1 428,451 - SM_b20415 0.34 -3.3 428,571 + SM_b20415 0.43 -0.0 428,571 + SM_b20415 0.43 +0.7 428,571 + SM_b20415 0.43 +0.6 428,572 - SM_b20415 0.43 +1.2 428,603 + SM_b20415 0.46 -2.3 428,640 + SM_b20415 0.48 +0.4 428,640 + SM_b20415 0.48 +0.4 428,641 - SM_b20415 0.49 -0.8 428,641 - SM_b20415 0.49 -0.0
Or see this region's nucleotide sequence