Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20368 and SM_b20369 are separated by 5 nucleotides SM_b20369 and SM_b20370 overlap by 4 nucleotides SM_b20370 and SM_b20371 are separated by 44 nucleotides
SM_b20368: SM_b20368 - hypothetical protein, at 380,366 to 381,379
_b20368
SM_b20369: SM_b20369 - hypothetical protein, at 381,385 to 382,626
_b20369
SM_b20370: SM_b20370 - ATP-binding transport protein, at 382,623 to 383,303
_b20370
SM_b20371: SM_b20371 - ribose-5-phosphate isomerase B, at 383,348 to 383,794
_b20371
Position (kb) 381
382
383 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 380.501 kb on + strand, within SM_b20368 at 380.501 kb on + strand, within SM_b20368 at 380.502 kb on - strand, within SM_b20368 at 380.988 kb on - strand, within SM_b20368 at 380.988 kb on - strand, within SM_b20368 at 381.044 kb on - strand, within SM_b20368 at 381.065 kb on - strand, within SM_b20368 at 381.074 kb on + strand, within SM_b20368 at 381.075 kb on - strand, within SM_b20368 at 381.135 kb on + strand, within SM_b20368 at 381.273 kb on + strand, within SM_b20368 at 381.273 kb on + strand, within SM_b20368 at 381.274 kb on - strand, within SM_b20368 at 381.274 kb on - strand, within SM_b20368 at 381.309 kb on + strand at 381.310 kb on - strand at 381.892 kb on - strand, within SM_b20369 at 382.025 kb on - strand, within SM_b20369 at 382.025 kb on - strand, within SM_b20369 at 382.025 kb on - strand, within SM_b20369 at 382.222 kb on + strand, within SM_b20369 at 382.223 kb on - strand, within SM_b20369 at 382.432 kb on + strand, within SM_b20369 at 382.433 kb on - strand, within SM_b20369 at 382.433 kb on - strand, within SM_b20369 at 382.516 kb on + strand at 382.524 kb on - strand at 382.524 kb on - strand at 382.610 kb on + strand at 382.611 kb on - strand at 382.658 kb on + strand at 382.658 kb on + strand at 382.659 kb on - strand at 382.659 kb on - strand at 382.659 kb on - strand at 382.659 kb on - strand at 382.660 kb on + strand at 382.660 kb on + strand at 382.661 kb on - strand at 382.661 kb on - strand at 382.661 kb on - strand at 382.773 kb on + strand, within SM_b20370 at 382.774 kb on - strand, within SM_b20370 at 382.878 kb on - strand, within SM_b20370 at 382.878 kb on - strand, within SM_b20370 at 383.171 kb on - strand, within SM_b20370 at 383.301 kb on + strand at 383.302 kb on - strand at 383.428 kb on - strand, within SM_b20371
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 380,501 + SM_b20368 0.13 -1.3 380,501 + SM_b20368 0.13 -0.9 380,502 - SM_b20368 0.13 -1.0 380,988 - SM_b20368 0.61 -0.8 380,988 - SM_b20368 0.61 +0.4 381,044 - SM_b20368 0.67 +3.7 381,065 - SM_b20368 0.69 -3.3 381,074 + SM_b20368 0.70 +0.4 381,075 - SM_b20368 0.70 -0.2 381,135 + SM_b20368 0.76 -4.0 381,273 + SM_b20368 0.89 -0.8 381,273 + SM_b20368 0.89 -0.0 381,274 - SM_b20368 0.90 +0.2 381,274 - SM_b20368 0.90 +0.9 381,309 + +0.0 381,310 - +0.8 381,892 - SM_b20369 0.41 -0.1 382,025 - SM_b20369 0.52 +0.6 382,025 - SM_b20369 0.52 -0.8 382,025 - SM_b20369 0.52 +2.0 382,222 + SM_b20369 0.67 +1.4 382,223 - SM_b20369 0.67 -1.6 382,432 + SM_b20369 0.84 +0.9 382,433 - SM_b20369 0.84 -2.6 382,433 - SM_b20369 0.84 +1.2 382,516 + +0.7 382,524 - -0.7 382,524 - +0.3 382,610 + +1.3 382,611 - +2.5 382,658 + -2.6 382,658 + -1.7 382,659 - +0.1 382,659 - -2.4 382,659 - -2.6 382,659 - +1.2 382,660 + +0.1 382,660 + -1.9 382,661 - +0.0 382,661 - -1.4 382,661 - +0.1 382,773 + SM_b20370 0.22 -0.3 382,774 - SM_b20370 0.22 +0.1 382,878 - SM_b20370 0.37 +1.6 382,878 - SM_b20370 0.37 +2.0 383,171 - SM_b20370 0.80 +1.6 383,301 + +0.5 383,302 - -0.8 383,428 - SM_b20371 0.18 +1.6
Or see this region's nucleotide sequence