Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20358 and SM_b20359 are separated by 116 nucleotides SM_b20359 and SM_b20360 are separated by 40 nucleotides SM_b20360 and SM_b20361 are separated by 85 nucleotides
SM_b20358: SM_b20358 - regulatory protein, at 367,812 to 369,374
_b20358
SM_b20359: SM_b20359 - hypothetical protein, at 369,491 to 370,786
_b20359
SM_b20360: SM_b20360 - hypothetical protein, at 370,827 to 371,558
_b20360
SM_b20361: SM_b20361 - ionic voltage-gated channel protein, at 371,644 to 372,441
_b20361
Position (kb) 369
370
371 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 368.612 kb on - strand, within SM_b20358 at 368.644 kb on - strand, within SM_b20358 at 368.747 kb on - strand, within SM_b20358 at 368.949 kb on - strand, within SM_b20358 at 369.001 kb on + strand, within SM_b20358 at 369.001 kb on + strand, within SM_b20358 at 369.001 kb on + strand, within SM_b20358 at 369.002 kb on - strand, within SM_b20358 at 369.012 kb on + strand, within SM_b20358 at 369.012 kb on + strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.013 kb on - strand, within SM_b20358 at 369.014 kb on + strand, within SM_b20358 at 369.014 kb on + strand, within SM_b20358 at 369.195 kb on + strand, within SM_b20358 at 369.223 kb on + strand at 369.224 kb on - strand at 369.260 kb on - strand at 369.360 kb on + strand at 369.360 kb on + strand at 369.361 kb on - strand at 369.590 kb on + strand at 369.590 kb on + strand at 369.590 kb on + strand at 369.590 kb on + strand at 369.591 kb on - strand at 369.591 kb on - strand at 369.592 kb on + strand at 369.592 kb on + strand at 369.593 kb on - strand at 369.593 kb on - strand at 369.593 kb on - strand at 369.593 kb on - strand at 369.701 kb on + strand, within SM_b20359 at 369.701 kb on + strand, within SM_b20359 at 369.872 kb on + strand, within SM_b20359 at 369.872 kb on + strand, within SM_b20359 at 369.873 kb on - strand, within SM_b20359 at 369.873 kb on - strand, within SM_b20359 at 370.023 kb on + strand, within SM_b20359 at 370.024 kb on - strand, within SM_b20359 at 370.078 kb on - strand, within SM_b20359 at 370.214 kb on - strand, within SM_b20359 at 370.694 kb on - strand at 370.694 kb on - strand at 370.695 kb on + strand at 370.696 kb on - strand at 370.696 kb on - strand at 370.696 kb on - strand at 371.063 kb on - strand, within SM_b20360 at 371.136 kb on + strand, within SM_b20360 at 371.136 kb on + strand, within SM_b20360 at 371.137 kb on - strand, within SM_b20360 at 371.481 kb on + strand, within SM_b20360 at 371.482 kb on - strand, within SM_b20360 at 371.485 kb on - strand at 371.538 kb on - strand at 371.556 kb on + strand at 371.590 kb on + strand at 371.590 kb on + strand at 371.590 kb on + strand at 371.591 kb on - strand at 371.663 kb on - strand at 371.753 kb on + strand, within SM_b20361 at 371.753 kb on + strand, within SM_b20361 at 371.753 kb on + strand, within SM_b20361
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 368,612 - SM_b20358 0.51 -0.8 368,644 - SM_b20358 0.53 +1.1 368,747 - SM_b20358 0.60 -0.3 368,949 - SM_b20358 0.73 -0.7 369,001 + SM_b20358 0.76 -0.2 369,001 + SM_b20358 0.76 -1.3 369,001 + SM_b20358 0.76 +2.9 369,002 - SM_b20358 0.76 +0.1 369,012 + SM_b20358 0.77 +1.1 369,012 + SM_b20358 0.77 +1.1 369,013 - SM_b20358 0.77 -1.7 369,013 - SM_b20358 0.77 -0.2 369,013 - SM_b20358 0.77 -0.4 369,013 - SM_b20358 0.77 -0.2 369,013 - SM_b20358 0.77 +1.7 369,013 - SM_b20358 0.77 -0.1 369,013 - SM_b20358 0.77 +4.3 369,013 - SM_b20358 0.77 +1.5 369,013 - SM_b20358 0.77 +0.1 369,013 - SM_b20358 0.77 -0.3 369,014 + SM_b20358 0.77 +1.7 369,014 + SM_b20358 0.77 +1.6 369,195 + SM_b20358 0.88 +0.5 369,223 + -0.0 369,224 - +0.7 369,260 - -0.8 369,360 + -0.8 369,360 + +0.4 369,361 - +1.0 369,590 + +0.3 369,590 + -0.6 369,590 + -0.4 369,590 + +0.7 369,591 - -2.8 369,591 - -0.3 369,592 + -0.9 369,592 + +1.0 369,593 - -1.0 369,593 - -0.4 369,593 - -0.6 369,593 - -2.0 369,701 + SM_b20359 0.16 -3.1 369,701 + SM_b20359 0.16 -2.5 369,872 + SM_b20359 0.29 +1.1 369,872 + SM_b20359 0.29 +1.0 369,873 - SM_b20359 0.29 +0.6 369,873 - SM_b20359 0.29 +0.5 370,023 + SM_b20359 0.41 +0.4 370,024 - SM_b20359 0.41 +0.0 370,078 - SM_b20359 0.45 +1.6 370,214 - SM_b20359 0.56 +3.2 370,694 - +0.8 370,694 - +1.2 370,695 + -0.0 370,696 - -0.0 370,696 - +0.1 370,696 - -0.3 371,063 - SM_b20360 0.32 -0.1 371,136 + SM_b20360 0.42 +0.9 371,136 + SM_b20360 0.42 +0.5 371,137 - SM_b20360 0.42 +0.8 371,481 + SM_b20360 0.89 -0.6 371,482 - SM_b20360 0.89 +0.4 371,485 - -1.1 371,538 - +1.6 371,556 + -2.1 371,590 + +1.5 371,590 + -1.6 371,590 + +1.6 371,591 - +0.7 371,663 - +1.6 371,753 + SM_b20361 0.14 +0.3 371,753 + SM_b20361 0.14 -0.2 371,753 + SM_b20361 0.14 +1.2
Or see this region's nucleotide sequence