Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20176

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20174 and SM_b20175 overlap by 44 nucleotidesSM_b20175 and SM_b20176 overlap by 4 nucleotidesSM_b20176 and SM_b20177 are separated by 173 nucleotidesSM_b20177 and SM_b20178 are separated by 126 nucleotides SM_b20174: SM_b20174 - cytochrome c protein, at 192,858 to 193,388 _b20174 SM_b20175: SM_b20175 - hypothetical protein, at 193,345 to 194,211 _b20175 SM_b20176: SM_b20176 - hypothetical protein, at 194,208 to 194,753 _b20176 SM_b20177: SM_b20177 - hypothetical protein, at 194,927 to 195,448 _b20177 SM_b20178: SM_b20178 - hypothetical protein, at 195,575 to 196,762 _b20178 Position (kb) 194 195Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 193.257 kb on + strand, within SM_b20174at 193.258 kb on - strand, within SM_b20174at 193.272 kb on + strand, within SM_b20174at 193.272 kb on + strand, within SM_b20174at 193.272 kb on + strand, within SM_b20174at 193.272 kb on + strand, within SM_b20174at 193.272 kb on + strand, within SM_b20174at 193.272 kb on + strand, within SM_b20174at 193.272 kb on + strand, within SM_b20174at 193.272 kb on + strand, within SM_b20174at 193.273 kb on - strand, within SM_b20174at 193.273 kb on - strand, within SM_b20174at 193.273 kb on - strand, within SM_b20174at 193.273 kb on - strand, within SM_b20174at 193.273 kb on - strand, within SM_b20174at 193.273 kb on - strand, within SM_b20174at 193.273 kb on - strand, within SM_b20174at 193.386 kb on + strandat 193.386 kb on + strandat 193.461 kb on - strand, within SM_b20175at 193.588 kb on + strand, within SM_b20175at 193.589 kb on - strand, within SM_b20175at 193.702 kb on + strand, within SM_b20175at 193.703 kb on - strand, within SM_b20175at 193.705 kb on + strand, within SM_b20175at 193.705 kb on + strand, within SM_b20175at 193.706 kb on - strand, within SM_b20175at 193.706 kb on - strand, within SM_b20175at 193.706 kb on - strand, within SM_b20175at 193.706 kb on - strand, within SM_b20175at 193.708 kb on - strand, within SM_b20175at 193.708 kb on - strand, within SM_b20175at 193.708 kb on - strand, within SM_b20175at 193.708 kb on - strand, within SM_b20175at 193.708 kb on - strand, within SM_b20175at 193.708 kb on - strand, within SM_b20175at 193.708 kb on - strand, within SM_b20175at 193.717 kb on + strand, within SM_b20175at 193.718 kb on - strand, within SM_b20175at 193.718 kb on - strand, within SM_b20175at 193.718 kb on - strand, within SM_b20175at 193.718 kb on - strand, within SM_b20175at 193.830 kb on + strand, within SM_b20175at 193.831 kb on - strand, within SM_b20175at 193.867 kb on + strand, within SM_b20175at 193.868 kb on - strand, within SM_b20175at 194.050 kb on + strand, within SM_b20175at 194.407 kb on + strand, within SM_b20176at 194.488 kb on + strand, within SM_b20176at 194.488 kb on + strand, within SM_b20176at 194.539 kb on - strand, within SM_b20176at 194.652 kb on + strand, within SM_b20176at 194.658 kb on + strand, within SM_b20176at 194.658 kb on + strand, within SM_b20176at 194.659 kb on - strand, within SM_b20176at 194.659 kb on - strand, within SM_b20176at 194.822 kb on - strandat 194.959 kb on - strandat 194.959 kb on - strandat 195.065 kb on + strand, within SM_b20177at 195.070 kb on + strand, within SM_b20177at 195.071 kb on - strand, within SM_b20177at 195.108 kb on + strand, within SM_b20177at 195.108 kb on + strand, within SM_b20177at 195.295 kb on + strand, within SM_b20177at 195.296 kb on - strand, within SM_b20177at 195.298 kb on - strand, within SM_b20177at 195.298 kb on - strand, within SM_b20177at 195.345 kb on - strand, within SM_b20177at 195.345 kb on - strand, within SM_b20177at 195.482 kb on + strandat 195.483 kb on - strandat 195.491 kb on + strandat 195.492 kb on - strandat 195.514 kb on - strandat 195.524 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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193,257 + SM_b20174 0.75 +1.3
193,258 - SM_b20174 0.75 +4.3
193,272 + SM_b20174 0.78 -1.5
193,272 + SM_b20174 0.78 -1.2
193,272 + SM_b20174 0.78 +0.8
193,272 + SM_b20174 0.78 -0.2
193,272 + SM_b20174 0.78 -0.2
193,272 + SM_b20174 0.78 -0.6
193,272 + SM_b20174 0.78 +1.3
193,272 + SM_b20174 0.78 +0.7
193,273 - SM_b20174 0.78 -2.3
193,273 - SM_b20174 0.78 -3.0
193,273 - SM_b20174 0.78 -0.0
193,273 - SM_b20174 0.78 -3.2
193,273 - SM_b20174 0.78 +1.7
193,273 - SM_b20174 0.78 +0.5
193,273 - SM_b20174 0.78 +0.1
193,386 + -0.3
193,386 + +0.2
193,461 - SM_b20175 0.13 -0.6
193,588 + SM_b20175 0.28 -0.2
193,589 - SM_b20175 0.28 +1.6
193,702 + SM_b20175 0.41 +0.3
193,703 - SM_b20175 0.41 -1.7
193,705 + SM_b20175 0.42 -1.0
193,705 + SM_b20175 0.42 +2.8
193,706 - SM_b20175 0.42 +0.4
193,706 - SM_b20175 0.42 -1.4
193,706 - SM_b20175 0.42 +0.8
193,706 - SM_b20175 0.42 -0.6
193,708 - SM_b20175 0.42 -2.5
193,708 - SM_b20175 0.42 -1.2
193,708 - SM_b20175 0.42 +0.2
193,708 - SM_b20175 0.42 +1.2
193,708 - SM_b20175 0.42 -1.2
193,708 - SM_b20175 0.42 -1.0
193,708 - SM_b20175 0.42 +0.6
193,717 + SM_b20175 0.43 -2.9
193,718 - SM_b20175 0.43 +2.9
193,718 - SM_b20175 0.43 +0.0
193,718 - SM_b20175 0.43 -1.0
193,718 - SM_b20175 0.43 +0.1
193,830 + SM_b20175 0.56 -0.6
193,831 - SM_b20175 0.56 -1.3
193,867 + SM_b20175 0.60 +0.5
193,868 - SM_b20175 0.60 -0.9
194,050 + SM_b20175 0.81 +0.1
194,407 + SM_b20176 0.36 -2.2
194,488 + SM_b20176 0.51 -0.6
194,488 + SM_b20176 0.51 -0.9
194,539 - SM_b20176 0.61 +0.4
194,652 + SM_b20176 0.81 -1.3
194,658 + SM_b20176 0.82 +1.5
194,658 + SM_b20176 0.82 -0.8
194,659 - SM_b20176 0.83 +0.4
194,659 - SM_b20176 0.83 -2.5
194,822 - +1.4
194,959 - -2.1
194,959 - -0.4
195,065 + SM_b20177 0.26 -0.2
195,070 + SM_b20177 0.27 -2.0
195,071 - SM_b20177 0.28 -0.6
195,108 + SM_b20177 0.35 +0.7
195,108 + SM_b20177 0.35 +0.1
195,295 + SM_b20177 0.70 +3.1
195,296 - SM_b20177 0.71 -0.0
195,298 - SM_b20177 0.71 +0.8
195,298 - SM_b20177 0.71 +0.9
195,345 - SM_b20177 0.80 +1.4
195,345 - SM_b20177 0.80 +1.1
195,482 + -0.3
195,483 - +5.1
195,491 + -0.1
195,492 - +0.2
195,514 - +2.2
195,524 + +0.9

Or see this region's nucleotide sequence