Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20161 and SM_b20162 are separated by 193 nucleotides SM_b20162 and SM_b20163 are separated by 44 nucleotides SM_b20163 and SM_b20164 overlap by 4 nucleotides
SM_b20161: SM_b20161 - hypothetical protein, at 179,533 to 179,883
_b20161
SM_b20162: SM_b20162 - transcriptional regulator, at 180,077 to 180,766
_b20162
SM_b20163: SM_b20163 - hypothetical protein, at 180,811 to 181,980
_b20163
SM_b20164: SM_b20164 - sensor histidine kinase, at 181,977 to 184,220
_b20164
Position (kb) 180
181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 179.910 kb on + strand at 179.910 kb on + strand at 179.911 kb on - strand at 180.059 kb on + strand at 180.060 kb on - strand at 180.149 kb on + strand, within SM_b20162 at 180.150 kb on - strand, within SM_b20162 at 180.190 kb on + strand, within SM_b20162 at 180.190 kb on + strand, within SM_b20162 at 180.304 kb on - strand, within SM_b20162 at 180.442 kb on + strand, within SM_b20162 at 180.443 kb on - strand, within SM_b20162 at 180.466 kb on + strand, within SM_b20162 at 180.485 kb on + strand, within SM_b20162 at 180.486 kb on - strand, within SM_b20162 at 180.486 kb on - strand, within SM_b20162 at 180.486 kb on - strand, within SM_b20162 at 180.486 kb on - strand, within SM_b20162 at 180.486 kb on - strand, within SM_b20162 at 180.501 kb on - strand, within SM_b20162 at 180.673 kb on + strand, within SM_b20162 at 180.673 kb on + strand, within SM_b20162 at 180.673 kb on + strand, within SM_b20162 at 180.674 kb on - strand, within SM_b20162 at 180.741 kb on + strand at 180.742 kb on - strand at 181.261 kb on - strand, within SM_b20163 at 181.261 kb on - strand, within SM_b20163 at 181.535 kb on - strand, within SM_b20163 at 181.535 kb on - strand, within SM_b20163 at 181.535 kb on - strand, within SM_b20163 at 181.621 kb on + strand, within SM_b20163 at 181.621 kb on + strand, within SM_b20163 at 181.622 kb on - strand, within SM_b20163 at 181.804 kb on + strand, within SM_b20163 at 181.804 kb on + strand, within SM_b20163 at 181.805 kb on - strand, within SM_b20163 at 181.895 kb on - strand at 182.163 kb on - strand at 182.163 kb on - strand at 182.219 kb on - strand, within SM_b20164 at 182.368 kb on - strand, within SM_b20164 at 182.777 kb on - strand, within SM_b20164 at 182.777 kb on - strand, within SM_b20164 at 182.777 kb on - strand, within SM_b20164
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 179,910 + +0.3 179,910 + -0.6 179,911 - -0.2 180,059 + +0.6 180,060 - +0.2 180,149 + SM_b20162 0.10 -0.8 180,150 - SM_b20162 0.11 +0.2 180,190 + SM_b20162 0.16 -2.3 180,190 + SM_b20162 0.16 -0.2 180,304 - SM_b20162 0.33 +0.6 180,442 + SM_b20162 0.53 -2.2 180,443 - SM_b20162 0.53 -0.3 180,466 + SM_b20162 0.56 -1.4 180,485 + SM_b20162 0.59 -1.4 180,486 - SM_b20162 0.59 +0.7 180,486 - SM_b20162 0.59 +0.0 180,486 - SM_b20162 0.59 +0.6 180,486 - SM_b20162 0.59 +0.9 180,486 - SM_b20162 0.59 -0.3 180,501 - SM_b20162 0.61 -0.4 180,673 + SM_b20162 0.86 +0.0 180,673 + SM_b20162 0.86 +0.8 180,673 + SM_b20162 0.86 -0.8 180,674 - SM_b20162 0.87 -1.6 180,741 + +0.6 180,742 - +0.3 181,261 - SM_b20163 0.38 -0.5 181,261 - SM_b20163 0.38 +0.0 181,535 - SM_b20163 0.62 -0.6 181,535 - SM_b20163 0.62 -0.0 181,535 - SM_b20163 0.62 -1.5 181,621 + SM_b20163 0.69 -0.6 181,621 + SM_b20163 0.69 -1.0 181,622 - SM_b20163 0.69 +3.2 181,804 + SM_b20163 0.85 -2.0 181,804 + SM_b20163 0.85 -2.9 181,805 - SM_b20163 0.85 +0.4 181,895 - -2.4 182,163 - +1.1 182,163 - +0.7 182,219 - SM_b20164 0.11 -0.2 182,368 - SM_b20164 0.17 -0.0 182,777 - SM_b20164 0.36 -3.6 182,777 - SM_b20164 0.36 +1.7 182,777 - SM_b20164 0.36 +1.1
Or see this region's nucleotide sequence