Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20139 and SM_b20140 are separated by 19 nucleotides SM_b20140 and SM_b20141 overlap by 1 nucleotides SM_b20141 and SM_b20142 overlap by 8 nucleotides SM_b20142 and SM_b20143 are separated by 14 nucleotides
SM_b20139: SM_b20139 - hypothetical protein, at 153,414 to 153,908
_b20139
SM_b20140: SM_b20140 - dihydrodipicolinate synthase, at 153,928 to 154,809
_b20140
SM_b20141: SM_b20141 - oligopeptide ABC transporter ATP-binding protein, at 154,809 to 156,455
_b20141
SM_b20142: SM_b20142 - oligopeptide ABC transporter permease, at 156,448 to 157,371
_b20142
SM_b20143: SM_b20143 - oligopeptide ABC transporter permease, at 157,386 to 158,300
_b20143
Position (kb) 154
155
156
157 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 153.887 kb on + strand at 154.100 kb on + strand, within SM_b20140 at 154.101 kb on - strand, within SM_b20140 at 154.256 kb on + strand, within SM_b20140 at 154.296 kb on - strand, within SM_b20140 at 154.344 kb on + strand, within SM_b20140 at 154.415 kb on + strand, within SM_b20140 at 154.415 kb on + strand, within SM_b20140 at 154.415 kb on + strand, within SM_b20140 at 154.416 kb on - strand, within SM_b20140 at 154.421 kb on + strand, within SM_b20140 at 154.422 kb on - strand, within SM_b20140 at 154.422 kb on - strand, within SM_b20140 at 154.422 kb on - strand, within SM_b20140 at 154.698 kb on + strand, within SM_b20140 at 154.698 kb on + strand, within SM_b20140 at 154.699 kb on - strand, within SM_b20140 at 154.699 kb on - strand, within SM_b20140 at 154.699 kb on - strand, within SM_b20140 at 154.749 kb on - strand at 154.863 kb on + strand at 154.864 kb on - strand at 154.922 kb on + strand at 154.923 kb on - strand at 154.925 kb on - strand at 154.940 kb on + strand at 155.002 kb on + strand, within SM_b20141 at 155.341 kb on + strand, within SM_b20141 at 155.413 kb on + strand, within SM_b20141 at 155.413 kb on + strand, within SM_b20141 at 155.414 kb on - strand, within SM_b20141 at 155.603 kb on - strand, within SM_b20141 at 155.704 kb on + strand, within SM_b20141 at 155.705 kb on - strand, within SM_b20141 at 155.726 kb on - strand, within SM_b20141 at 156.254 kb on + strand, within SM_b20141 at 156.367 kb on + strand at 156.367 kb on + strand at 156.367 kb on + strand at 156.368 kb on - strand at 156.599 kb on + strand, within SM_b20142 at 156.599 kb on + strand, within SM_b20142 at 156.599 kb on + strand, within SM_b20142 at 156.695 kb on + strand, within SM_b20142 at 156.695 kb on + strand, within SM_b20142 at 156.917 kb on + strand, within SM_b20142 at 156.917 kb on + strand, within SM_b20142 at 156.922 kb on + strand, within SM_b20142 at 156.922 kb on + strand, within SM_b20142 at 156.922 kb on + strand, within SM_b20142 at 156.923 kb on - strand, within SM_b20142 at 157.243 kb on + strand, within SM_b20142 at 157.244 kb on - strand, within SM_b20142 at 157.244 kb on - strand, within SM_b20142 at 157.244 kb on - strand, within SM_b20142 at 157.417 kb on + strand at 157.417 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 153,887 + +0.1 154,100 + SM_b20140 0.20 +0.5 154,101 - SM_b20140 0.20 -0.4 154,256 + SM_b20140 0.37 +0.1 154,296 - SM_b20140 0.42 +0.3 154,344 + SM_b20140 0.47 +0.5 154,415 + SM_b20140 0.55 -1.6 154,415 + SM_b20140 0.55 -3.4 154,415 + SM_b20140 0.55 +1.6 154,416 - SM_b20140 0.55 +0.2 154,421 + SM_b20140 0.56 -0.4 154,422 - SM_b20140 0.56 +0.2 154,422 - SM_b20140 0.56 +2.4 154,422 - SM_b20140 0.56 -0.5 154,698 + SM_b20140 0.87 +0.1 154,698 + SM_b20140 0.87 -0.9 154,699 - SM_b20140 0.87 +0.3 154,699 - SM_b20140 0.87 -0.3 154,699 - SM_b20140 0.87 +0.3 154,749 - +0.4 154,863 + -0.5 154,864 - +0.2 154,922 + -2.6 154,923 - -0.2 154,925 - -0.5 154,940 + -0.2 155,002 + SM_b20141 0.12 -1.9 155,341 + SM_b20141 0.32 +1.2 155,413 + SM_b20141 0.37 -0.9 155,413 + SM_b20141 0.37 +1.1 155,414 - SM_b20141 0.37 -0.2 155,603 - SM_b20141 0.48 -0.0 155,704 + SM_b20141 0.54 +2.0 155,705 - SM_b20141 0.54 +0.4 155,726 - SM_b20141 0.56 -1.0 156,254 + SM_b20141 0.88 +1.4 156,367 + +0.2 156,367 + +1.1 156,367 + -1.3 156,368 - +0.7 156,599 + SM_b20142 0.16 +0.4 156,599 + SM_b20142 0.16 -3.0 156,599 + SM_b20142 0.16 +1.0 156,695 + SM_b20142 0.27 +0.8 156,695 + SM_b20142 0.27 -3.5 156,917 + SM_b20142 0.51 -2.3 156,917 + SM_b20142 0.51 +1.2 156,922 + SM_b20142 0.51 +2.7 156,922 + SM_b20142 0.51 -1.0 156,922 + SM_b20142 0.51 -0.6 156,923 - SM_b20142 0.51 -0.7 157,243 + SM_b20142 0.86 -0.1 157,244 - SM_b20142 0.86 -0.4 157,244 - SM_b20142 0.86 +0.4 157,244 - SM_b20142 0.86 +0.8 157,417 + -3.4 157,417 + -2.4
Or see this region's nucleotide sequence