Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20110

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20108 and SM_b20109 are separated by 72 nucleotidesSM_b20109 and SM_b20110 overlap by 4 nucleotidesSM_b20110 and SM_b20111 overlap by 4 nucleotides SM_b20108: SM_b20108 - peptide ABC transporter substrate-binding protein, at 118,703 to 120,211 _b20108 SM_b20109: SM_b20109 - peptide ABC transporter permease, at 120,284 to 121,207 _b20109 SM_b20110: SM_b20110 - oligopeptide ABC transporter permease, at 121,204 to 122,151 _b20110 SM_b20111: SM_b20111 - oligopeptide ABC transporter ATP-binding protein, at 122,148 to 123,788 _b20111 Position (kb) 121 122 123Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 120.265 kb on - strandat 120.370 kb on + strandat 120.386 kb on + strand, within SM_b20109at 120.393 kb on - strand, within SM_b20109at 120.482 kb on + strand, within SM_b20109at 120.483 kb on - strand, within SM_b20109at 120.891 kb on - strand, within SM_b20109at 120.891 kb on - strand, within SM_b20109at 121.156 kb on - strandat 121.166 kb on + strandat 121.188 kb on + strandat 121.188 kb on + strandat 121.189 kb on - strandat 121.189 kb on - strandat 121.189 kb on - strandat 121.189 kb on - strandat 121.435 kb on + strand, within SM_b20110at 121.435 kb on + strand, within SM_b20110at 121.436 kb on - strand, within SM_b20110at 121.573 kb on + strand, within SM_b20110at 121.726 kb on + strand, within SM_b20110at 121.726 kb on + strand, within SM_b20110at 121.726 kb on + strand, within SM_b20110at 121.931 kb on + strand, within SM_b20110at 121.932 kb on - strand, within SM_b20110at 121.932 kb on - strand, within SM_b20110at 122.053 kb on - strand, within SM_b20110at 122.077 kb on + strandat 122.077 kb on + strandat 122.078 kb on - strandat 122.078 kb on - strandat 122.078 kb on - strandat 122.078 kb on - strandat 122.476 kb on - strand, within SM_b20111at 122.476 kb on - strand, within SM_b20111at 122.477 kb on + strand, within SM_b20111at 122.904 kb on + strand, within SM_b20111at 122.905 kb on - strand, within SM_b20111at 122.906 kb on + strand, within SM_b20111at 122.945 kb on + strand, within SM_b20111at 122.945 kb on + strand, within SM_b20111at 122.946 kb on - strand, within SM_b20111at 122.946 kb on - strand, within SM_b20111at 123.015 kb on + strand, within SM_b20111at 123.015 kb on + strand, within SM_b20111at 123.016 kb on - strand, within SM_b20111at 123.016 kb on - strand, within SM_b20111at 123.018 kb on - strand, within SM_b20111

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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120,265 - +0.6
120,370 + -0.1
120,386 + SM_b20109 0.11 +0.8
120,393 - SM_b20109 0.12 -1.2
120,482 + SM_b20109 0.21 +0.4
120,483 - SM_b20109 0.22 +1.9
120,891 - SM_b20109 0.66 -2.1
120,891 - SM_b20109 0.66 -0.3
121,156 - -0.3
121,166 + +1.4
121,188 + +0.2
121,188 + -0.4
121,189 - +2.8
121,189 - -0.3
121,189 - +0.4
121,189 - -2.6
121,435 + SM_b20110 0.24 -1.0
121,435 + SM_b20110 0.24 -1.7
121,436 - SM_b20110 0.24 -0.4
121,573 + SM_b20110 0.39 +0.5
121,726 + SM_b20110 0.55 +1.0
121,726 + SM_b20110 0.55 -0.4
121,726 + SM_b20110 0.55 -0.9
121,931 + SM_b20110 0.77 -2.7
121,932 - SM_b20110 0.77 -1.2
121,932 - SM_b20110 0.77 -0.8
122,053 - SM_b20110 0.90 -2.4
122,077 + -0.7
122,077 + -1.6
122,078 - -1.1
122,078 - +0.4
122,078 - -0.6
122,078 - -1.2
122,476 - SM_b20111 0.20 -3.8
122,476 - SM_b20111 0.20 -1.0
122,477 + SM_b20111 0.20 +0.2
122,904 + SM_b20111 0.46 -0.2
122,905 - SM_b20111 0.46 -0.4
122,906 + SM_b20111 0.46 -0.1
122,945 + SM_b20111 0.49 -2.2
122,945 + SM_b20111 0.49 +0.1
122,946 - SM_b20111 0.49 -0.9
122,946 - SM_b20111 0.49 -0.6
123,015 + SM_b20111 0.53 -0.9
123,015 + SM_b20111 0.53 +0.6
123,016 - SM_b20111 0.53 +1.6
123,016 - SM_b20111 0.53 -0.2
123,018 - SM_b20111 0.53 +0.5

Or see this region's nucleotide sequence