Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04233 and SMc04234 are separated by 830 nucleotides SMc04234 and SMc04235 are separated by 127 nucleotides
SMc04233: SMc04233 - hypothetical protein, at 2,059,894 to 2,060,511
SMc04233
SMc04234: SMc04234 - cold shock-like transcription regulator protein, at 2,061,342 to 2,061,554
SMc04234
SMc04235: SMc04235 - tRNA-dihydrouridine synthase A, at 2,061,682 to 2,062,761
SMc04235
Position (kb)
2061
2062 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2060.469 kb on - strand at 2060.469 kb on - strand at 2060.511 kb on + strand at 2060.527 kb on - strand at 2060.527 kb on - strand at 2060.527 kb on - strand at 2060.533 kb on - strand at 2060.593 kb on + strand at 2060.594 kb on - strand at 2060.594 kb on - strand at 2060.594 kb on - strand at 2060.791 kb on - strand at 2060.812 kb on + strand at 2060.893 kb on + strand at 2060.894 kb on - strand at 2060.909 kb on - strand at 2061.016 kb on + strand at 2061.016 kb on + strand at 2061.683 kb on + strand at 2061.683 kb on + strand at 2061.683 kb on + strand at 2061.784 kb on + strand at 2061.784 kb on + strand at 2061.785 kb on - strand at 2061.785 kb on - strand at 2061.794 kb on + strand, within SMc04235 at 2061.874 kb on - strand, within SMc04235 at 2061.887 kb on + strand, within SMc04235 at 2061.887 kb on + strand, within SMc04235 at 2061.936 kb on + strand, within SMc04235 at 2061.936 kb on + strand, within SMc04235 at 2061.936 kb on + strand, within SMc04235 at 2061.937 kb on - strand, within SMc04235 at 2062.007 kb on + strand, within SMc04235 at 2062.360 kb on + strand, within SMc04235 at 2062.360 kb on + strand, within SMc04235 at 2062.361 kb on - strand, within SMc04235
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 2,060,469 - +1.5 2,060,469 - +2.4 2,060,511 + +2.3 2,060,527 - -0.0 2,060,527 - +3.5 2,060,527 - -0.2 2,060,533 - +0.5 2,060,593 + -0.1 2,060,594 - -0.5 2,060,594 - -1.1 2,060,594 - +0.5 2,060,791 - -1.3 2,060,812 + -0.1 2,060,893 + +0.2 2,060,894 - -1.7 2,060,909 - -0.1 2,061,016 + +0.8 2,061,016 + -0.4 2,061,683 + -0.7 2,061,683 + -2.0 2,061,683 + -1.6 2,061,784 + +0.4 2,061,784 + -1.2 2,061,785 - +0.1 2,061,785 - +0.1 2,061,794 + SMc04235 0.10 -0.2 2,061,874 - SMc04235 0.18 +0.5 2,061,887 + SMc04235 0.19 +0.3 2,061,887 + SMc04235 0.19 +0.8 2,061,936 + SMc04235 0.24 +0.0 2,061,936 + SMc04235 0.24 +0.4 2,061,936 + SMc04235 0.24 +4.3 2,061,937 - SMc04235 0.24 +0.9 2,062,007 + SMc04235 0.30 +0.9 2,062,360 + SMc04235 0.63 -0.0 2,062,360 + SMc04235 0.63 +1.4 2,062,361 - SMc04235 0.63 +0.4
Or see this region's nucleotide sequence