Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02861 and SMc02862 overlap by 1 nucleotides SMc02862 and SMc02863 are separated by 234 nucleotides SMc02863 and SMc02864 are separated by 38 nucleotides SMc02864 and SMc02865 are separated by 7 nucleotides
SMc02861: SMc02861 - phosphate transporter, at 214,914 to 215,918
SMc02861
SMc02862: SMc02862 - Pit accessory protein, at 215,918 to 216,562
SMc02862
SMc02863: SMc02863 - recombination protein F, at 216,797 to 217,921
SMc02863
SMc02864: SMc02864 - molybdopterin biosynthesis protein MoeB, at 217,960 to 218,724
SMc02864
SMc02865: SMc02865 - acetyltransferase, at 218,732 to 219,202
SMc02865
Position (kb) 216
217
218 Strain fitness (log2 ratio) -2
-1
0
1
2 at 215.997 kb on + strand, within SMc02862 at 216.017 kb on - strand, within SMc02862 at 216.018 kb on + strand, within SMc02862 at 216.018 kb on + strand, within SMc02862 at 216.018 kb on + strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.765 kb on + strand at 216.766 kb on - strand at 216.766 kb on - strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.849 kb on - strand at 216.849 kb on - strand at 216.849 kb on - strand at 216.849 kb on - strand at 217.157 kb on - strand, within SMc02863 at 217.536 kb on - strand, within SMc02863 at 217.723 kb on + strand, within SMc02863 at 217.724 kb on - strand, within SMc02863 at 217.724 kb on - strand, within SMc02863 at 217.724 kb on - strand, within SMc02863 at 217.886 kb on + strand at 217.886 kb on + strand at 217.886 kb on + strand at 218.332 kb on + strand, within SMc02864 at 218.332 kb on + strand, within SMc02864 at 218.333 kb on - strand, within SMc02864 at 218.367 kb on + strand, within SMc02864 at 218.375 kb on - strand, within SMc02864 at 218.570 kb on + strand, within SMc02864 at 218.669 kb on - strand at 218.669 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 215,997 + SMc02862 0.12 -1.4 216,017 - SMc02862 0.15 -1.5 216,018 + SMc02862 0.16 -1.2 216,018 + SMc02862 0.16 -1.5 216,018 + SMc02862 0.16 +0.3 216,019 - SMc02862 0.16 -1.0 216,019 - SMc02862 0.16 -2.0 216,019 - SMc02862 0.16 -1.3 216,019 - SMc02862 0.16 -1.0 216,019 - SMc02862 0.16 -0.9 216,765 + -0.6 216,766 - +0.2 216,766 - +0.2 216,848 + -0.1 216,848 + -0.9 216,848 + -0.6 216,848 + -0.2 216,848 + +0.0 216,849 - +0.4 216,849 - +1.0 216,849 - +0.3 216,849 - +0.5 217,157 - SMc02863 0.32 -1.4 217,536 - SMc02863 0.66 -1.8 217,723 + SMc02863 0.82 +2.4 217,724 - SMc02863 0.82 -0.5 217,724 - SMc02863 0.82 -1.0 217,724 - SMc02863 0.82 -1.1 217,886 + -1.6 217,886 + -2.3 217,886 + -1.5 218,332 + SMc02864 0.49 -0.2 218,332 + SMc02864 0.49 -0.2 218,333 - SMc02864 0.49 -0.6 218,367 + SMc02864 0.53 -1.2 218,375 - SMc02864 0.54 +1.9 218,570 + SMc02864 0.80 +0.3 218,669 - -0.0 218,669 - +0.0
Or see this region's nucleotide sequence