Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02825 and SMc02826 are separated by 87 nucleotides SMc02826 and SMc02827 are separated by 8 nucleotides
SMc02825: SMc02825 - aminopeptidase, at 172,213 to 173,604
SMc02825
SMc02826: SMc02826 - transcriptional regulator, at 173,692 to 174,036
SMc02826
SMc02827: SMc02827 - hypothetical protein, at 174,045 to 174,899
SMc02827
Position (kb) 173
174
175 Strain fitness (log2 ratio) -2
-1
0
1
2 at 172.750 kb on + strand, within SMc02825 at 172.750 kb on + strand, within SMc02825 at 173.107 kb on + strand, within SMc02825 at 173.107 kb on + strand, within SMc02825 at 173.188 kb on + strand, within SMc02825 at 173.363 kb on - strand, within SMc02825 at 173.363 kb on - strand, within SMc02825 at 173.576 kb on - strand at 173.607 kb on - strand at 173.607 kb on - strand at 173.607 kb on - strand at 173.689 kb on - strand at 173.707 kb on - strand at 173.707 kb on - strand at 173.805 kb on - strand, within SMc02826 at 173.812 kb on + strand, within SMc02826 at 173.960 kb on + strand, within SMc02826 at 173.961 kb on - strand, within SMc02826 at 173.986 kb on + strand, within SMc02826 at 174.041 kb on - strand at 174.041 kb on - strand at 174.041 kb on - strand at 174.294 kb on + strand at 174.303 kb on + strand, within SMc02827 at 174.304 kb on - strand, within SMc02827 at 174.550 kb on - strand, within SMc02827 at 174.835 kb on + strand at 174.835 kb on + strand at 174.867 kb on + strand at 174.867 kb on + strand at 174.867 kb on + strand at 175.033 kb on + strand at 175.033 kb on + strand at 175.034 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 172,750 + SMc02825 0.39 -0.2 172,750 + SMc02825 0.39 +1.3 173,107 + SMc02825 0.64 -1.8 173,107 + SMc02825 0.64 +0.0 173,188 + SMc02825 0.70 +0.3 173,363 - SMc02825 0.83 -1.3 173,363 - SMc02825 0.83 +0.5 173,576 - -0.5 173,607 - -1.3 173,607 - +1.4 173,607 - -0.5 173,689 - +1.8 173,707 - +0.3 173,707 - -0.0 173,805 - SMc02826 0.33 +0.6 173,812 + SMc02826 0.35 +0.3 173,960 + SMc02826 0.78 +0.4 173,961 - SMc02826 0.78 +1.0 173,986 + SMc02826 0.85 +1.6 174,041 - -1.2 174,041 - +0.1 174,041 - -1.2 174,294 + +0.8 174,303 + SMc02827 0.30 +2.6 174,304 - SMc02827 0.30 -1.2 174,550 - SMc02827 0.59 -0.8 174,835 + -0.4 174,835 + -0.4 174,867 + +1.8 174,867 + -0.3 174,867 + +0.0 175,033 + -0.1 175,033 + -0.8 175,034 - -0.4
Or see this region's nucleotide sequence