Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02276 and SMc02277 are separated by 135 nucleotides SMc02277 and SMc02278 are separated by 46 nucleotides SMc02278 and SMc02279 are separated by 330 nucleotides SMc02279 and SMc02280 are separated by 52 nucleotides
SMc02276: SMc02276 - nicotinate phosphoribosyltransferase, at 650,739 to 652,043
SMc02276
SMc02277: SMc02277 - hypothetical protein, at 652,179 to 652,391
SMc02277
SMc02278: SMc02278 - hypothetical protein, at 652,438 to 652,590
SMc02278
SMc02279: SMc02279 - signal peptide protein, at 652,921 to 653,298
SMc02279
SMc02280: SMc02280 - hypothetical protein, at 653,351 to 653,620
SMc02280
Position (kb)
652
653 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 651.525 kb on + strand, within SMc02276 at 651.526 kb on - strand, within SMc02276 at 651.783 kb on + strand, within SMc02276 at 651.784 kb on - strand, within SMc02276 at 651.898 kb on + strand, within SMc02276 at 651.899 kb on - strand, within SMc02276 at 651.990 kb on + strand at 651.991 kb on - strand at 652.097 kb on - strand at 652.097 kb on - strand at 652.160 kb on + strand at 652.161 kb on - strand at 652.192 kb on - strand at 652.396 kb on + strand at 652.584 kb on + strand at 652.638 kb on - strand at 652.643 kb on + strand at 652.644 kb on - strand at 652.644 kb on - strand at 652.644 kb on - strand at 652.687 kb on + strand at 652.790 kb on - strand at 652.790 kb on - strand at 652.797 kb on - strand at 652.910 kb on - strand at 652.996 kb on + strand, within SMc02279 at 652.997 kb on - strand, within SMc02279 at 652.997 kb on - strand, within SMc02279 at 653.202 kb on + strand, within SMc02279 at 653.300 kb on + strand at 653.386 kb on + strand, within SMc02280 at 653.521 kb on + strand, within SMc02280 at 653.522 kb on - strand, within SMc02280 at 653.522 kb on - strand, within SMc02280
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 651,525 + SMc02276 0.60 +0.6 651,526 - SMc02276 0.60 +0.2 651,783 + SMc02276 0.80 +0.5 651,784 - SMc02276 0.80 +0.6 651,898 + SMc02276 0.89 +0.9 651,899 - SMc02276 0.89 +0.6 651,990 + +0.2 651,991 - -1.0 652,097 - -0.8 652,097 - +0.1 652,160 + -0.9 652,161 - -0.1 652,192 - +1.8 652,396 + +0.5 652,584 + -1.5 652,638 - -0.7 652,643 + +0.4 652,644 - +0.7 652,644 - -0.6 652,644 - -0.0 652,687 + +0.0 652,790 - +0.8 652,790 - -0.8 652,797 - -1.7 652,910 - -1.5 652,996 + SMc02279 0.20 -0.2 652,997 - SMc02279 0.20 -0.6 652,997 - SMc02279 0.20 -1.6 653,202 + SMc02279 0.74 -0.3 653,300 + -1.3 653,386 + SMc02280 0.13 -0.6 653,521 + SMc02280 0.63 -1.4 653,522 - SMc02280 0.63 +0.2 653,522 - SMc02280 0.63 -1.9
Or see this region's nucleotide sequence