Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02181 and SMc02180 are separated by 186 nucleotides SMc02180 and SMc02179 are separated by 58 nucleotides SMc02179 and SMc02178 are separated by 111 nucleotides SMc02178 and SMc02177 are separated by 198 nucleotides
SMc02181: SMc02181 - bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase, at 511,820 to 515,521
SMc02181
SMc02180: SMc02180 - hypothetical protein, at 515,708 to 516,022
SMc02180
SMc02179: SMc02179 - hypothetical protein, at 516,081 to 516,887
SMc02179
SMc02178: SMc02178 - hypothetical protein, at 516,999 to 517,460
SMc02178
SMc02177: SMc02177 - hypothetical protein, at 517,659 to 518,273
SMc02177
Position (kb) 516
517 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 515.284 kb on + strand at 515.285 kb on - strand at 515.285 kb on - strand at 515.285 kb on - strand at 515.285 kb on - strand at 515.705 kb on - strand at 515.705 kb on - strand at 515.792 kb on + strand, within SMc02180 at 515.792 kb on + strand, within SMc02180 at 515.792 kb on + strand, within SMc02180 at 515.792 kb on + strand, within SMc02180 at 515.792 kb on + strand, within SMc02180 at 515.792 kb on + strand, within SMc02180 at 515.793 kb on - strand, within SMc02180 at 515.793 kb on - strand, within SMc02180 at 515.892 kb on + strand, within SMc02180 at 515.892 kb on + strand at 515.892 kb on + strand, within SMc02180 at 515.892 kb on + strand, within SMc02180 at 515.893 kb on - strand, within SMc02180 at 515.893 kb on - strand, within SMc02180 at 515.893 kb on - strand, within SMc02180 at 516.033 kb on + strand at 516.108 kb on + strand at 516.108 kb on + strand at 516.109 kb on - strand at 516.109 kb on - strand at 516.109 kb on - strand at 516.166 kb on + strand, within SMc02179 at 516.218 kb on + strand, within SMc02179 at 516.219 kb on - strand, within SMc02179 at 516.219 kb on - strand, within SMc02179 at 516.309 kb on - strand, within SMc02179 at 516.343 kb on + strand, within SMc02179 at 516.344 kb on - strand, within SMc02179 at 516.344 kb on - strand, within SMc02179 at 516.344 kb on - strand, within SMc02179 at 516.344 kb on - strand, within SMc02179 at 516.374 kb on + strand, within SMc02179 at 516.375 kb on - strand, within SMc02179 at 516.399 kb on - strand, within SMc02179 at 516.486 kb on + strand, within SMc02179 at 516.486 kb on + strand, within SMc02179 at 516.486 kb on + strand, within SMc02179 at 516.486 kb on + strand, within SMc02179 at 516.518 kb on - strand, within SMc02179 at 516.537 kb on - strand, within SMc02179 at 516.783 kb on + strand, within SMc02179 at 516.784 kb on - strand, within SMc02179 at 516.784 kb on - strand, within SMc02179 at 516.784 kb on - strand, within SMc02179 at 517.099 kb on + strand, within SMc02178 at 517.099 kb on + strand, within SMc02178 at 517.100 kb on - strand, within SMc02178 at 517.229 kb on + strand, within SMc02178 at 517.230 kb on - strand, within SMc02178 at 517.432 kb on + strand at 517.432 kb on + strand at 517.432 kb on + strand at 517.433 kb on - strand at 517.433 kb on - strand at 517.599 kb on + strand at 517.848 kb on + strand, within SMc02177 at 517.848 kb on + strand, within SMc02177 at 517.848 kb on + strand, within SMc02177 at 517.849 kb on - strand, within SMc02177
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 515,284 + -0.4 515,285 - -1.6 515,285 - +1.8 515,285 - +0.1 515,285 - -0.2 515,705 - +0.6 515,705 - +0.4 515,792 + SMc02180 0.27 +0.5 515,792 + SMc02180 0.27 +0.2 515,792 + SMc02180 0.27 +0.4 515,792 + SMc02180 0.27 -1.1 515,792 + SMc02180 0.27 -0.0 515,792 + SMc02180 0.27 -1.4 515,793 - SMc02180 0.27 +0.7 515,793 - SMc02180 0.27 -0.1 515,892 + SMc02180 0.58 +0.8 515,892 + +0.5 515,892 + SMc02180 0.58 +0.3 515,892 + SMc02180 0.58 +0.3 515,893 - SMc02180 0.59 -0.3 515,893 - SMc02180 0.59 +1.5 515,893 - SMc02180 0.59 +1.1 516,033 + +0.2 516,108 + -2.0 516,108 + +1.0 516,109 - +0.3 516,109 - +1.2 516,109 - -0.8 516,166 + SMc02179 0.11 -1.0 516,218 + SMc02179 0.17 -1.2 516,219 - SMc02179 0.17 +0.4 516,219 - SMc02179 0.17 -1.2 516,309 - SMc02179 0.28 -0.1 516,343 + SMc02179 0.32 -1.0 516,344 - SMc02179 0.33 -2.4 516,344 - SMc02179 0.33 +0.1 516,344 - SMc02179 0.33 -1.9 516,344 - SMc02179 0.33 -0.4 516,374 + SMc02179 0.36 -0.0 516,375 - SMc02179 0.36 +1.4 516,399 - SMc02179 0.39 -1.0 516,486 + SMc02179 0.50 -0.1 516,486 + SMc02179 0.50 -0.0 516,486 + SMc02179 0.50 +0.1 516,486 + SMc02179 0.50 -0.1 516,518 - SMc02179 0.54 -4.3 516,537 - SMc02179 0.57 -0.4 516,783 + SMc02179 0.87 -1.4 516,784 - SMc02179 0.87 -1.0 516,784 - SMc02179 0.87 -0.7 516,784 - SMc02179 0.87 -1.1 517,099 + SMc02178 0.22 +0.2 517,099 + SMc02178 0.22 +2.1 517,100 - SMc02178 0.22 -0.3 517,229 + SMc02178 0.50 +0.5 517,230 - SMc02178 0.50 -0.5 517,432 + -0.2 517,432 + +0.3 517,432 + -1.7 517,433 - -0.1 517,433 - -0.6 517,599 + +0.2 517,848 + SMc02177 0.31 +0.8 517,848 + SMc02177 0.31 +0.6 517,848 + SMc02177 0.31 -0.9 517,849 - SMc02177 0.31 +0.8
Or see this region's nucleotide sequence