Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00971 and SMc00970 are separated by 216 nucleotides SMc00970 and SMc00969 are separated by 3 nucleotides SMc00969 and SMc00968 are separated by 62 nucleotides
SMc00971: SMc00971 - hypothetical protein, at 969,984 to 970,907
SMc00971
SMc00970: SMc00970 - exodeoxyribonuclease VII small subunit, at 971,124 to 971,375
SMc00970
SMc00969: SMc00969 - hypothetical protein, at 971,379 to 972,308
SMc00969
SMc00968: SMc00968 - oxidoreductase, at 972,371 to 973,339
SMc00968
Position (kb) 971
972
973 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 970.433 kb on + strand, within SMc00971 at 970.434 kb on - strand, within SMc00971 at 970.660 kb on + strand, within SMc00971 at 970.661 kb on - strand, within SMc00971 at 970.661 kb on - strand, within SMc00971 at 971.119 kb on + strand at 971.125 kb on + strand at 971.252 kb on - strand, within SMc00970 at 971.252 kb on - strand, within SMc00970 at 971.307 kb on - strand, within SMc00970 at 971.380 kb on + strand at 971.380 kb on + strand at 971.380 kb on + strand at 971.381 kb on - strand at 971.402 kb on + strand at 971.440 kb on + strand at 971.496 kb on + strand, within SMc00969 at 971.497 kb on - strand, within SMc00969 at 971.497 kb on - strand, within SMc00969 at 971.740 kb on + strand, within SMc00969 at 971.748 kb on + strand, within SMc00969 at 971.748 kb on + strand, within SMc00969 at 971.749 kb on - strand, within SMc00969 at 971.889 kb on + strand at 971.890 kb on - strand, within SMc00969 at 972.058 kb on + strand, within SMc00969 at 972.058 kb on + strand, within SMc00969 at 972.058 kb on + strand, within SMc00969 at 972.059 kb on - strand, within SMc00969 at 972.059 kb on - strand, within SMc00969 at 972.059 kb on - strand, within SMc00969 at 972.059 kb on - strand, within SMc00969 at 972.062 kb on + strand, within SMc00969 at 972.062 kb on + strand, within SMc00969 at 972.063 kb on - strand, within SMc00969 at 972.320 kb on - strand at 972.320 kb on - strand at 972.320 kb on - strand at 972.584 kb on + strand, within SMc00968 at 972.585 kb on - strand, within SMc00968 at 972.642 kb on + strand, within SMc00968 at 972.975 kb on + strand, within SMc00968 at 972.975 kb on + strand, within SMc00968 at 972.975 kb on + strand, within SMc00968 at 972.976 kb on - strand, within SMc00968 at 972.976 kb on - strand, within SMc00968 at 973.183 kb on + strand, within SMc00968 at 973.184 kb on - strand, within SMc00968 at 973.185 kb on + strand, within SMc00968 at 973.186 kb on - strand, within SMc00968 at 973.236 kb on - strand, within SMc00968
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 970,433 + SMc00971 0.49 +0.9 970,434 - SMc00971 0.49 -0.2 970,660 + SMc00971 0.73 +1.9 970,661 - SMc00971 0.73 -1.2 970,661 - SMc00971 0.73 -1.2 971,119 + +0.8 971,125 + +0.3 971,252 - SMc00970 0.51 -0.5 971,252 - SMc00970 0.51 -0.9 971,307 - SMc00970 0.73 -1.4 971,380 + -1.2 971,380 + -2.1 971,380 + -0.6 971,381 - -2.3 971,402 + -1.2 971,440 + -0.2 971,496 + SMc00969 0.13 +0.2 971,497 - SMc00969 0.13 +0.2 971,497 - SMc00969 0.13 -0.5 971,740 + SMc00969 0.39 -0.2 971,748 + SMc00969 0.40 -1.0 971,748 + SMc00969 0.40 +0.0 971,749 - SMc00969 0.40 +1.6 971,889 + +1.0 971,890 - SMc00969 0.55 +1.2 972,058 + SMc00969 0.73 -0.2 972,058 + SMc00969 0.73 +0.1 972,058 + SMc00969 0.73 -1.2 972,059 - SMc00969 0.73 +1.7 972,059 - SMc00969 0.73 -0.3 972,059 - SMc00969 0.73 -4.4 972,059 - SMc00969 0.73 +1.0 972,062 + SMc00969 0.73 +0.2 972,062 + SMc00969 0.73 -1.7 972,063 - SMc00969 0.74 +1.0 972,320 - +0.3 972,320 - -0.7 972,320 - -1.4 972,584 + SMc00968 0.22 -1.4 972,585 - SMc00968 0.22 -1.7 972,642 + SMc00968 0.28 +0.3 972,975 + SMc00968 0.62 +0.3 972,975 + SMc00968 0.62 -0.7 972,975 + SMc00968 0.62 +1.5 972,976 - SMc00968 0.62 +0.6 972,976 - SMc00968 0.62 -0.9 973,183 + SMc00968 0.84 +0.1 973,184 - SMc00968 0.84 +3.0 973,185 + SMc00968 0.84 -0.3 973,186 - SMc00968 0.84 +2.0 973,236 - SMc00968 0.89 -0.1
Or see this region's nucleotide sequence