Strain Fitness in Sinorhizobium meliloti 1021 around SMc00548

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00466 and SMc00548 are separated by 134 nucleotidesSMc00548 and SMc00465 are separated by 39 nucleotidesSMc00465 and SMc00463 overlap by 14 nucleotidesSMc00463 and SMc00462 are separated by 14 nucleotides SMc00466: SMc00466 - hypothetical protein, at 1,959,117 to 1,960,196 SMc00466 SMc00548: SMc00548 - signal peptide protein, at 1,960,331 to 1,960,882 SMc00548 SMc00465: SMc00465 - 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, at 1,960,922 to 1,961,446 SMc00465 SMc00463: SMc00463 - dihydroneopterin aldolase DHNA lyase folate biosynthesis protein, at 1,961,433 to 1,961,804 SMc00463 SMc00462: SMc00462 - dihydropteroate synthase antibiotic resistance transferase folate protein, at 1,961,819 to 1,962,670 SMc00462 Position (kb) 1960 1961Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1959.450 kb on + strand, within SMc00466at 1959.846 kb on + strand, within SMc00466at 1959.847 kb on - strand, within SMc00466at 1959.886 kb on - strand, within SMc00466at 1959.886 kb on - strand, within SMc00466at 1960.880 kb on + strandat 1960.923 kb on + strandat 1960.923 kb on + strandat 1961.843 kb on - strandat 1961.843 kb on - strandat 1961.843 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,959,450 + SMc00466 0.31 +0.3
1,959,846 + SMc00466 0.68 -1.6
1,959,847 - SMc00466 0.68 -4.0
1,959,886 - SMc00466 0.71 -1.9
1,959,886 - SMc00466 0.71 -0.1
1,960,880 + +0.5
1,960,923 + -1.2
1,960,923 + -0.7
1,961,843 - -1.1
1,961,843 - +0.1
1,961,843 - -0.5

Or see this region's nucleotide sequence