Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00396 and SMc00397 are separated by 151 nucleotides SMc00397 and SMc00460 overlap by 52 nucleotides SMc00460 and SMc00399 are separated by 213 nucleotides
SMc00396: SMc00396 - hypothetical protein, at 346,263 to 346,715
SMc00396
SMc00397: SMc00397 - hypothetical protein, at 346,867 to 347,427
SMc00397
SMc00460: SMc00460 - hypothetical protein, at 347,376 to 348,509
SMc00460
SMc00399: SMc00399 - magnesium/cobalt transporter CorA, at 348,723 to 349,712
SMc00399
Position (kb) 347
348
349 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 346.507 kb on + strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.508 kb on - strand, within SMc00396 at 346.798 kb on + strand at 346.799 kb on - strand at 346.799 kb on - strand at 346.864 kb on + strand at 346.864 kb on + strand at 346.865 kb on - strand at 346.865 kb on - strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.867 kb on - strand at 346.867 kb on - strand at 346.867 kb on - strand at 346.867 kb on - strand at 346.867 kb on - strand at 346.875 kb on + strand at 346.994 kb on - strand, within SMc00397 at 347.162 kb on - strand, within SMc00397 at 347.162 kb on - strand, within SMc00397 at 347.162 kb on - strand, within SMc00397 at 347.170 kb on + strand, within SMc00397 at 347.171 kb on - strand, within SMc00397 at 347.302 kb on + strand, within SMc00397 at 347.377 kb on + strand at 347.378 kb on - strand at 347.495 kb on - strand, within SMc00460 at 347.548 kb on - strand, within SMc00460 at 347.548 kb on - strand, within SMc00460 at 347.665 kb on + strand, within SMc00460 at 347.666 kb on - strand, within SMc00460 at 347.666 kb on - strand, within SMc00460 at 347.773 kb on + strand, within SMc00460 at 347.773 kb on + strand, within SMc00460 at 347.774 kb on - strand, within SMc00460 at 347.774 kb on - strand, within SMc00460 at 347.774 kb on - strand, within SMc00460 at 347.774 kb on - strand at 347.889 kb on + strand, within SMc00460 at 348.028 kb on + strand, within SMc00460 at 348.029 kb on - strand, within SMc00460 at 348.073 kb on + strand, within SMc00460 at 348.074 kb on - strand, within SMc00460 at 348.121 kb on + strand, within SMc00460 at 348.121 kb on + strand, within SMc00460 at 348.232 kb on + strand, within SMc00460 at 348.233 kb on - strand, within SMc00460 at 348.233 kb on - strand, within SMc00460 at 348.233 kb on - strand, within SMc00460 at 348.233 kb on - strand, within SMc00460 at 348.233 kb on - strand, within SMc00460 at 348.497 kb on + strand at 348.498 kb on - strand at 348.706 kb on + strand at 348.725 kb on - strand at 348.725 kb on - strand at 348.725 kb on - strand at 348.748 kb on + strand at 348.754 kb on + strand at 348.754 kb on + strand at 348.755 kb on - strand at 348.755 kb on - strand at 348.755 kb on - strand at 348.793 kb on + strand at 348.793 kb on + strand at 348.800 kb on - strand at 349.087 kb on + strand, within SMc00399
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 346,507 + SMc00396 0.54 +0.4 346,507 + SMc00396 0.54 -0.5 346,507 + SMc00396 0.54 -0.7 346,508 - SMc00396 0.54 +1.0 346,798 + -0.2 346,799 - -1.1 346,799 - -0.6 346,864 + -0.6 346,864 + -0.1 346,865 - +1.4 346,865 - +1.3 346,866 + -0.6 346,866 + +0.3 346,866 + -1.1 346,866 + +2.1 346,866 + -0.0 346,866 + -0.2 346,866 + -0.8 346,866 + +2.9 346,867 - +0.7 346,867 - +0.2 346,867 - +0.7 346,867 - -0.8 346,867 - -0.1 346,875 + -0.3 346,994 - SMc00397 0.23 +1.4 347,162 - SMc00397 0.53 +1.0 347,162 - SMc00397 0.53 +1.3 347,162 - SMc00397 0.53 -2.9 347,170 + SMc00397 0.54 -0.1 347,171 - SMc00397 0.54 -1.1 347,302 + SMc00397 0.78 +1.8 347,377 + -0.0 347,378 - -0.3 347,495 - SMc00460 0.10 -0.8 347,548 - SMc00460 0.15 -0.2 347,548 - SMc00460 0.15 -0.1 347,665 + SMc00460 0.25 -1.9 347,666 - SMc00460 0.26 -1.1 347,666 - SMc00460 0.26 +2.5 347,773 + SMc00460 0.35 +0.9 347,773 + SMc00460 0.35 +0.9 347,774 - SMc00460 0.35 +0.2 347,774 - SMc00460 0.35 +0.0 347,774 - SMc00460 0.35 -1.7 347,774 - -1.3 347,889 + SMc00460 0.45 -0.4 348,028 + SMc00460 0.57 -0.2 348,029 - SMc00460 0.58 -1.1 348,073 + SMc00460 0.61 -0.0 348,074 - SMc00460 0.62 +0.7 348,121 + SMc00460 0.66 +0.1 348,121 + SMc00460 0.66 -0.5 348,232 + SMc00460 0.75 +0.9 348,233 - SMc00460 0.76 +0.9 348,233 - SMc00460 0.76 -0.1 348,233 - SMc00460 0.76 +0.4 348,233 - SMc00460 0.76 +0.1 348,233 - SMc00460 0.76 -0.9 348,497 + +0.5 348,498 - -0.1 348,706 + -0.1 348,725 - -0.4 348,725 - +1.0 348,725 - -0.1 348,748 + -0.1 348,754 + -0.9 348,754 + +0.2 348,755 - -1.5 348,755 - -0.9 348,755 - -1.5 348,793 + +0.1 348,793 + -1.0 348,800 - +0.2 349,087 + SMc00399 0.37 -4.0
Or see this region's nucleotide sequence