Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00410 and SMc00411 are separated by 120 nucleotides SMc00411 and SMc00412 are separated by 105 nucleotides SMc00412 and SMc00413 are separated by 7 nucleotides
SMc00410: SMc00410 - oxidoreductase, at 360,576 to 361,556
SMc00410
SMc00411: SMc00411 - hypothetical protein, at 361,677 to 361,964
SMc00411
SMc00412: SMc00412 - orotidine 5'-phosphate decarboxylase, at 362,070 to 362,774
SMc00412
SMc00413: SMc00413 - hypothetical protein, at 362,782 to 363,363
SMc00413
Position (kb) 361
362 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 360.979 kb on + strand, within SMc00410 at 361.162 kb on + strand, within SMc00410 at 361.162 kb on + strand, within SMc00410 at 361.163 kb on - strand, within SMc00410 at 361.203 kb on - strand, within SMc00410 at 361.203 kb on - strand, within SMc00410 at 361.203 kb on - strand, within SMc00410 at 361.596 kb on + strand at 361.596 kb on + strand at 361.596 kb on + strand at 361.597 kb on - strand at 361.600 kb on + strand at 361.600 kb on + strand at 361.600 kb on + strand at 361.601 kb on - strand at 361.811 kb on + strand, within SMc00411 at 361.903 kb on + strand, within SMc00411 at 361.903 kb on + strand, within SMc00411 at 361.904 kb on - strand, within SMc00411 at 361.904 kb on - strand, within SMc00411 at 361.910 kb on + strand, within SMc00411 at 361.911 kb on - strand, within SMc00411 at 361.929 kb on + strand, within SMc00411 at 361.929 kb on + strand, within SMc00411 at 361.929 kb on + strand, within SMc00411 at 361.930 kb on - strand, within SMc00411 at 361.930 kb on - strand, within SMc00411 at 361.931 kb on + strand, within SMc00411 at 361.932 kb on - strand, within SMc00411 at 361.932 kb on - strand, within SMc00411 at 361.951 kb on + strand at 362.005 kb on + strand at 362.005 kb on + strand at 362.006 kb on - strand at 362.006 kb on - strand at 362.006 kb on - strand at 362.059 kb on + strand at 362.061 kb on + strand at 362.380 kb on + strand, within SMc00412 at 362.381 kb on - strand, within SMc00412 at 362.386 kb on + strand, within SMc00412 at 362.497 kb on + strand, within SMc00412 at 362.497 kb on + strand, within SMc00412 at 362.660 kb on - strand, within SMc00412 at 362.670 kb on - strand, within SMc00412 at 362.671 kb on + strand, within SMc00412 at 362.672 kb on - strand, within SMc00412 at 362.672 kb on - strand, within SMc00412 at 362.918 kb on - strand, within SMc00413
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 360,979 + SMc00410 0.41 +0.7 361,162 + SMc00410 0.60 -1.5 361,162 + SMc00410 0.60 +1.0 361,163 - SMc00410 0.60 +0.8 361,203 - SMc00410 0.64 +1.3 361,203 - SMc00410 0.64 +0.1 361,203 - SMc00410 0.64 -0.7 361,596 + +1.1 361,596 + -1.8 361,596 + -0.5 361,597 - +0.4 361,600 + +0.6 361,600 + -1.1 361,600 + +1.2 361,601 - -0.5 361,811 + SMc00411 0.47 +0.3 361,903 + SMc00411 0.78 +0.4 361,903 + SMc00411 0.78 +1.0 361,904 - SMc00411 0.79 +0.3 361,904 - SMc00411 0.79 -0.3 361,910 + SMc00411 0.81 +4.8 361,911 - SMc00411 0.81 +0.4 361,929 + SMc00411 0.88 +1.0 361,929 + SMc00411 0.88 -0.9 361,929 + SMc00411 0.88 +0.1 361,930 - SMc00411 0.88 -0.1 361,930 - SMc00411 0.88 -1.8 361,931 + SMc00411 0.88 +1.2 361,932 - SMc00411 0.89 +0.6 361,932 - SMc00411 0.89 +0.8 361,951 + -1.4 362,005 + +0.7 362,005 + +0.8 362,006 - -0.1 362,006 - -0.3 362,006 - +0.1 362,059 + +1.7 362,061 + -0.5 362,380 + SMc00412 0.44 +0.4 362,381 - SMc00412 0.44 -1.5 362,386 + SMc00412 0.45 +0.9 362,497 + SMc00412 0.61 -3.8 362,497 + SMc00412 0.61 -0.1 362,660 - SMc00412 0.84 -0.1 362,670 - SMc00412 0.85 -0.5 362,671 + SMc00412 0.85 +0.9 362,672 - SMc00412 0.85 +0.3 362,672 - SMc00412 0.85 +1.9 362,918 - SMc00413 0.23 -0.5
Or see this region's nucleotide sequence