Strain Fitness in Sinorhizobium meliloti 1021 around SMc00075

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00074 and SMc00075 overlap by 1 nucleotidesSMc00075 and SMc00451 are separated by 271 nucleotides SMc00074: SMc00074 - transmembrane signal peptide protein, at 1,003,924 to 1,006,836 SMc00074 SMc00075: SMc00075 - ribosomal-protein-alanine acetyltransferase, at 1,006,836 to 1,007,447 SMc00075 SMc00451: SMc00451 - processing protease, at 1,007,719 to 1,009,017 SMc00451 Position (kb) 1006 1007 1008Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1006.925 kb on - strand, within SMc00075at 1006.925 kb on - strand, within SMc00075at 1006.937 kb on - strand, within SMc00075at 1007.042 kb on - strand, within SMc00075at 1007.069 kb on - strand, within SMc00075at 1007.069 kb on - strand, within SMc00075at 1007.073 kb on - strand, within SMc00075at 1007.381 kb on - strand, within SMc00075at 1007.450 kb on - strandat 1007.450 kb on - strandat 1007.450 kb on - strandat 1007.669 kb on - strandat 1007.737 kb on + strandat 1007.770 kb on + strandat 1007.771 kb on - strandat 1008.254 kb on + strand, within SMc00451at 1008.254 kb on + strand, within SMc00451at 1008.255 kb on - strand, within SMc00451

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
1,006,925 - SMc00075 0.15 +0.5
1,006,925 - SMc00075 0.15 +0.2
1,006,937 - SMc00075 0.17 +0.9
1,007,042 - SMc00075 0.34 +1.0
1,007,069 - SMc00075 0.38 +1.2
1,007,069 - SMc00075 0.38 -0.2
1,007,073 - SMc00075 0.39 +0.5
1,007,381 - SMc00075 0.89 -1.5
1,007,450 - -2.4
1,007,450 - -2.1
1,007,450 - -0.9
1,007,669 - +0.8
1,007,737 + -1.6
1,007,770 + +0.0
1,007,771 - +0.6
1,008,254 + SMc00451 0.41 +1.6
1,008,254 + SMc00451 0.41 -1.4
1,008,255 - SMc00451 0.41 -4.0

Or see this region's nucleotide sequence