Strain Fitness in Sinorhizobium meliloti 1021 around SMc00057

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00054 and SMc00055 overlap by 4 nucleotidesSMc00055 and SMc00056 overlap by 4 nucleotidesSMc00056 and SMc00057 overlap by 1 nucleotidesSMc00057 and SMc00058 are separated by 405 nucleotides SMc00054: SMc00054 - monovalent cation/H+ antiporter subunit D, at 1,088,209 to 1,089,774 SMc00054 SMc00055: SMc00055 - monovalent cation/H+ antiporter subunit E, at 1,089,771 to 1,090,247 SMc00055 SMc00056: SMc00056 - monovalent cation/H+ antiporter subunit F, at 1,090,244 to 1,090,615 SMc00056 SMc00057: SMc00057 - monovalent cation/H+ antiporter subunit G, at 1,090,615 to 1,090,965 SMc00057 SMc00058: SMc00058 - transcriptional regulator, at 1,091,371 to 1,091,802 SMc00058 Position (kb) 1090 1091Strain fitness (log2 ratio) -1 0 1at 1090.987 kb on + strandat 1091.930 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,090,987 + -0.7
1,091,930 - +0.3

Or see this region's nucleotide sequence