Strain Fitness in Sinorhizobium meliloti 1021 around SMa2391

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2387 and SMa2389 are separated by 208 nucleotidesSMa2389 and SMa2391 are separated by 304 nucleotidesSMa2391 and SMa2393 are separated by 155 nucleotides SMa2387: SMa2387 - TetR family transcriptional regulator, at 1,348,373 to 1,349,071 SMa2387 SMa2389: SMa2389 - OsmC-like protein, at 1,349,280 to 1,349,696 SMa2389 SMa2391: SMa2391 - replication initiation protein RepC, at 1,350,001 to 1,351,206 SMa2391 SMa2393: SMa2393 - RepB2 replication protein, at 1,351,362 to 1,352,363 SMa2393 Position (kb) 1350 1351 1352Strain fitness (log2 ratio) -3 -2 -1 0 1at 1349.198 kb on + strandat 1349.230 kb on - strandat 1349.238 kb on + strandat 1349.329 kb on + strand, within SMa2389at 1349.489 kb on + strand, within SMa2389at 1349.489 kb on + strand, within SMa2389at 1349.490 kb on - strand, within SMa2389at 1349.511 kb on + strand, within SMa2389at 1349.522 kb on + strand, within SMa2389at 1349.523 kb on - strand, within SMa2389at 1349.654 kb on + strand, within SMa2389at 1349.670 kb on - strandat 1349.671 kb on + strandat 1349.759 kb on + strandat 1349.759 kb on + strandat 1349.759 kb on + strandat 1349.760 kb on - strandat 1349.805 kb on + strandat 1349.806 kb on - strandat 1349.806 kb on - strandat 1349.824 kb on + strandat 1349.848 kb on + strandat 1349.953 kb on + strandat 1349.953 kb on + strandat 1349.953 kb on + strandat 1349.953 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,349,198 + -1.3
1,349,230 - +1.1
1,349,238 + -1.6
1,349,329 + SMa2389 0.12 +0.8
1,349,489 + SMa2389 0.50 -0.1
1,349,489 + SMa2389 0.50 -3.0
1,349,490 - SMa2389 0.50 -0.6
1,349,511 + SMa2389 0.55 -0.1
1,349,522 + SMa2389 0.58 -2.1
1,349,523 - SMa2389 0.58 -0.9
1,349,654 + SMa2389 0.90 +0.3
1,349,670 - -1.0
1,349,671 + -1.0
1,349,759 + +0.5
1,349,759 + -0.4
1,349,759 + +0.2
1,349,760 - +0.3
1,349,805 + -1.0
1,349,806 - +0.3
1,349,806 - +0.9
1,349,824 + +1.6
1,349,848 + +0.0
1,349,953 + -1.8
1,349,953 + +1.3
1,349,953 + -3.3
1,349,953 + -0.1

Or see this region's nucleotide sequence