Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1589 and SMa1591 are separated by 494 nucleotides
SMa1589: SMa1589 - hypothetical protein, at 883,252 to 883,638
SMa1589
SMa1591: SMa1591 - CyaI3 adenylate/guanylate cyclase, at 884,133 to 887,612
SMa1591
Position (kb) 883
884 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 882.308 kb on + strand at 882.353 kb on - strand at 882.375 kb on - strand at 882.383 kb on + strand at 882.395 kb on + strand at 882.463 kb on - strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.524 kb on - strand at 882.524 kb on - strand at 882.528 kb on - strand at 882.547 kb on + strand at 882.632 kb on + strand at 882.632 kb on + strand at 882.651 kb on + strand at 882.651 kb on + strand at 882.652 kb on - strand at 882.652 kb on - strand at 882.685 kb on + strand at 882.712 kb on + strand at 882.877 kb on + strand at 882.878 kb on - strand at 882.912 kb on + strand at 882.912 kb on + strand at 882.913 kb on - strand at 882.968 kb on + strand at 882.968 kb on + strand at 882.969 kb on - strand at 882.969 kb on - strand at 882.969 kb on - strand at 883.015 kb on + strand at 883.016 kb on - strand at 883.055 kb on + strand at 883.178 kb on + strand at 883.179 kb on - strand at 883.209 kb on + strand at 883.253 kb on + strand at 883.253 kb on + strand at 883.253 kb on + strand at 883.253 kb on + strand at 883.253 kb on + strand at 883.254 kb on - strand at 883.298 kb on - strand, within SMa1589 at 883.318 kb on + strand, within SMa1589 at 883.442 kb on - strand, within SMa1589 at 883.442 kb on - strand, within SMa1589 at 883.455 kb on + strand, within SMa1589 at 883.522 kb on + strand, within SMa1589 at 883.604 kb on + strand at 883.613 kb on + strand at 883.614 kb on - strand at 883.614 kb on - strand at 883.615 kb on + strand at 883.616 kb on - strand at 883.616 kb on - strand at 883.616 kb on - strand at 883.650 kb on + strand at 883.671 kb on - strand at 883.705 kb on + strand at 884.028 kb on - strand at 884.043 kb on - strand at 884.068 kb on + strand at 884.116 kb on + strand at 884.117 kb on - strand at 884.117 kb on - strand at 884.135 kb on - strand at 884.135 kb on - strand at 884.289 kb on + strand at 884.290 kb on - strand at 884.299 kb on - strand at 884.602 kb on - strand, within SMa1591
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 882,308 + -0.2 882,353 - -1.5 882,375 - -1.3 882,383 + +1.0 882,395 + +0.1 882,463 - +1.2 882,523 + -0.4 882,523 + +0.0 882,523 + -0.3 882,523 + -0.2 882,523 + +0.6 882,523 + -0.6 882,524 - -0.3 882,524 - -0.8 882,528 - +1.1 882,547 + +2.7 882,632 + -1.2 882,632 + +0.2 882,651 + -0.2 882,651 + +0.1 882,652 - +0.4 882,652 - +1.1 882,685 + -1.0 882,712 + +0.1 882,877 + +0.4 882,878 - +1.7 882,912 + +1.1 882,912 + -2.9 882,913 - +0.5 882,968 + +0.6 882,968 + +1.1 882,969 - -1.0 882,969 - +2.5 882,969 - +0.7 883,015 + -0.8 883,016 - -1.0 883,055 + -0.7 883,178 + +0.0 883,179 - +1.5 883,209 + +0.4 883,253 + -2.0 883,253 + -1.1 883,253 + -0.3 883,253 + +0.6 883,253 + -0.4 883,254 - +0.3 883,298 - SMa1589 0.12 -0.4 883,318 + SMa1589 0.17 +0.8 883,442 - SMa1589 0.49 +1.2 883,442 - SMa1589 0.49 +0.2 883,455 + SMa1589 0.52 +0.4 883,522 + SMa1589 0.70 +1.4 883,604 + +1.6 883,613 + -0.4 883,614 - -1.5 883,614 - -1.5 883,615 + -1.7 883,616 - -1.3 883,616 - -0.6 883,616 - -1.3 883,650 + -0.4 883,671 - -2.3 883,705 + -1.1 884,028 - +0.6 884,043 - +0.0 884,068 + +2.9 884,116 + -0.2 884,117 - +0.3 884,117 - +0.6 884,135 - +0.0 884,135 - -0.0 884,289 + +0.9 884,290 - -0.4 884,299 - -1.9 884,602 - SMa1591 0.13 +0.1
Or see this region's nucleotide sequence