Strain Fitness in Sinorhizobium meliloti 1021 around SMa1539

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1538 and SMa1539 overlap by 35 nucleotidesSMa1539 and SMa1541 overlap by 37 nucleotides SMa1538: SMa1538 - monovalent cation/H+ antiporter subunit D, at 848,840 to 850,600 SMa1538 SMa1539: SMa1539 - hypothetical protein, at 850,566 to 850,880 SMa1539 SMa1541: SMa1541 - monovalent cation/H+ antiporter subunit D, at 850,844 to 852,307 SMa1541 Position (kb) 850 851Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 849.580 kb on + strand, within SMa1538at 849.580 kb on + strand, within SMa1538at 849.581 kb on - strand, within SMa1538at 849.582 kb on + strandat 849.583 kb on - strand, within SMa1538at 849.583 kb on - strand, within SMa1538at 849.654 kb on + strand, within SMa1538at 849.693 kb on + strand, within SMa1538at 849.694 kb on - strand, within SMa1538at 849.771 kb on + strand, within SMa1538at 849.771 kb on + strand, within SMa1538at 849.771 kb on + strand, within SMa1538at 849.772 kb on - strand, within SMa1538at 849.772 kb on - strand, within SMa1538at 849.790 kb on + strand, within SMa1538at 849.790 kb on + strand, within SMa1538at 849.790 kb on + strand, within SMa1538at 849.790 kb on + strand, within SMa1538at 849.790 kb on + strand, within SMa1538at 849.791 kb on - strand, within SMa1538at 849.791 kb on - strand, within SMa1538at 849.791 kb on - strand, within SMa1538at 849.795 kb on + strand, within SMa1538at 849.796 kb on - strand, within SMa1538at 849.796 kb on - strand, within SMa1538at 849.835 kb on - strand, within SMa1538at 849.835 kb on - strand, within SMa1538at 849.835 kb on - strand, within SMa1538at 849.847 kb on - strand, within SMa1538at 849.847 kb on - strand, within SMa1538at 849.912 kb on + strand, within SMa1538at 849.912 kb on + strand, within SMa1538at 849.912 kb on + strand, within SMa1538at 849.975 kb on + strand, within SMa1538at 850.044 kb on + strand, within SMa1538at 850.162 kb on - strand, within SMa1538at 850.212 kb on + strand, within SMa1538at 850.260 kb on + strand, within SMa1538at 850.261 kb on - strand, within SMa1538at 850.299 kb on + strand, within SMa1538at 850.299 kb on + strand, within SMa1538at 850.347 kb on + strand, within SMa1538at 850.347 kb on + strand, within SMa1538at 850.348 kb on - strand, within SMa1538at 850.348 kb on - strand, within SMa1538at 850.470 kb on - strandat 850.539 kb on - strandat 850.600 kb on + strandat 850.600 kb on + strandat 850.600 kb on + strandat 850.600 kb on + strandat 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.601 kb on - strand, within SMa1539at 850.603 kb on + strand, within SMa1539at 850.604 kb on - strand, within SMa1539at 850.604 kb on - strand, within SMa1539at 850.720 kb on + strand, within SMa1539at 850.721 kb on - strand, within SMa1539at 850.781 kb on - strand, within SMa1539at 850.807 kb on + strand, within SMa1539at 850.878 kb on + strandat 850.878 kb on + strandat 850.879 kb on - strandat 850.879 kb on - strandat 851.002 kb on - strand, within SMa1541at 851.002 kb on - strand, within SMa1541at 851.020 kb on - strand, within SMa1541at 851.238 kb on + strand, within SMa1541at 851.238 kb on + strand, within SMa1541at 851.238 kb on + strand, within SMa1541at 851.238 kb on + strand, within SMa1541at 851.239 kb on - strand, within SMa1541at 851.239 kb on - strand, within SMa1541at 851.327 kb on + strand, within SMa1541at 851.333 kb on + strand, within SMa1541at 851.334 kb on - strand, within SMa1541at 851.334 kb on - strand, within SMa1541at 851.352 kb on + strand, within SMa1541at 851.352 kb on + strand, within SMa1541at 851.353 kb on - strand, within SMa1541at 851.353 kb on - strand, within SMa1541at 851.376 kb on + strand, within SMa1541at 851.376 kb on + strand, within SMa1541at 851.451 kb on + strand, within SMa1541at 851.451 kb on + strand, within SMa1541at 851.451 kb on + strand, within SMa1541at 851.451 kb on + strand, within SMa1541at 851.452 kb on - strand, within SMa1541at 851.746 kb on - strand, within SMa1541at 851.746 kb on - strand, within SMa1541at 851.805 kb on + strand, within SMa1541at 851.806 kb on - strand, within SMa1541at 851.847 kb on + strand, within SMa1541at 851.847 kb on + strand, within SMa1541at 851.848 kb on - strand, within SMa1541at 851.860 kb on - strand, within SMa1541

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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849,580 + SMa1538 0.42 +0.2
849,580 + SMa1538 0.42 +0.8
849,581 - SMa1538 0.42 -0.5
849,582 + -1.1
849,583 - SMa1538 0.42 +0.5
849,583 - SMa1538 0.42 -0.3
849,654 + SMa1538 0.46 +0.6
849,693 + SMa1538 0.48 -0.4
849,694 - SMa1538 0.48 -0.9
849,771 + SMa1538 0.53 -1.6
849,771 + SMa1538 0.53 -0.7
849,771 + SMa1538 0.53 -1.5
849,772 - SMa1538 0.53 +0.3
849,772 - SMa1538 0.53 -1.2
849,790 + SMa1538 0.54 +0.6
849,790 + SMa1538 0.54 +1.0
849,790 + SMa1538 0.54 -1.0
849,790 + SMa1538 0.54 -0.5
849,790 + SMa1538 0.54 +0.4
849,791 - SMa1538 0.54 -4.5
849,791 - SMa1538 0.54 -0.6
849,791 - SMa1538 0.54 -0.0
849,795 + SMa1538 0.54 -0.0
849,796 - SMa1538 0.54 +1.3
849,796 - SMa1538 0.54 +2.5
849,835 - SMa1538 0.57 -0.5
849,835 - SMa1538 0.57 +0.2
849,835 - SMa1538 0.57 -0.2
849,847 - SMa1538 0.57 -0.5
849,847 - SMa1538 0.57 +0.1
849,912 + SMa1538 0.61 -1.2
849,912 + SMa1538 0.61 +0.1
849,912 + SMa1538 0.61 +0.0
849,975 + SMa1538 0.64 +0.9
850,044 + SMa1538 0.68 -0.4
850,162 - SMa1538 0.75 +0.7
850,212 + SMa1538 0.78 +1.0
850,260 + SMa1538 0.81 +1.2
850,261 - SMa1538 0.81 -0.1
850,299 + SMa1538 0.83 -1.7
850,299 + SMa1538 0.83 -2.1
850,347 + SMa1538 0.86 -1.9
850,347 + SMa1538 0.86 +0.1
850,348 - SMa1538 0.86 -0.2
850,348 - SMa1538 0.86 +0.2
850,470 - +0.1
850,539 - -0.4
850,600 + -1.0
850,600 + +0.2
850,600 + +0.2
850,600 + +1.3
850,601 - SMa1539 0.11 +0.6
850,601 - SMa1539 0.11 +0.5
850,601 - SMa1539 0.11 -0.3
850,601 - SMa1539 0.11 -0.0
850,601 - SMa1539 0.11 -0.3
850,601 - SMa1539 0.11 +0.5
850,601 - SMa1539 0.11 +0.0
850,601 - SMa1539 0.11 -1.5
850,601 - SMa1539 0.11 -1.5
850,601 - SMa1539 0.11 +1.0
850,603 + SMa1539 0.12 +0.8
850,604 - SMa1539 0.12 -0.7
850,604 - SMa1539 0.12 -1.5
850,720 + SMa1539 0.49 +1.2
850,721 - SMa1539 0.49 -0.8
850,781 - SMa1539 0.68 +0.2
850,807 + SMa1539 0.77 +0.3
850,878 + -0.8
850,878 + -1.0
850,879 - +0.9
850,879 - -0.1
851,002 - SMa1541 0.11 +1.0
851,002 - SMa1541 0.11 -0.1
851,020 - SMa1541 0.12 -0.6
851,238 + SMa1541 0.27 -2.8
851,238 + SMa1541 0.27 +0.3
851,238 + SMa1541 0.27 +0.5
851,238 + SMa1541 0.27 +0.9
851,239 - SMa1541 0.27 +1.1
851,239 - SMa1541 0.27 +1.1
851,327 + SMa1541 0.33 -1.8
851,333 + SMa1541 0.33 -1.1
851,334 - SMa1541 0.33 -0.0
851,334 - SMa1541 0.33 +2.4
851,352 + SMa1541 0.35 -0.1
851,352 + SMa1541 0.35 -1.0
851,353 - SMa1541 0.35 +0.0
851,353 - SMa1541 0.35 +0.5
851,376 + SMa1541 0.36 -0.4
851,376 + SMa1541 0.36 -1.8
851,451 + SMa1541 0.41 +0.5
851,451 + SMa1541 0.41 -0.6
851,451 + SMa1541 0.41 +0.2
851,451 + SMa1541 0.41 -0.1
851,452 - SMa1541 0.42 -1.1
851,746 - SMa1541 0.62 -0.5
851,746 - SMa1541 0.62 +1.1
851,805 + SMa1541 0.66 +0.3
851,806 - SMa1541 0.66 -0.4
851,847 + SMa1541 0.69 +0.6
851,847 + SMa1541 0.69 +0.7
851,848 - SMa1541 0.69 -1.3
851,860 - SMa1541 0.69 +3.5

Or see this region's nucleotide sequence