Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1450 and SMa1452 are separated by 24 nucleotides SMa1452 and SMa1454 are separated by 121 nucleotides
SMa1450: SMa1450 - thiolase, at 799,195 to 800,385
SMa1450
SMa1452: SMa1452 - hypothetical protein, at 800,410 to 801,177
SMa1452
SMa1454: SMa1454 - AraC family transcriptional regulator, at 801,299 to 802,342
SMa1454
Position (kb) 800
801
802 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 799.841 kb on + strand, within SMa1450 at 799.841 kb on + strand, within SMa1450 at 799.842 kb on - strand, within SMa1450 at 799.842 kb on - strand, within SMa1450 at 799.872 kb on - strand, within SMa1450 at 799.872 kb on - strand, within SMa1450 at 799.922 kb on + strand, within SMa1450 at 800.009 kb on + strand, within SMa1450 at 800.469 kb on + strand at 800.469 kb on + strand at 800.469 kb on + strand at 800.470 kb on - strand at 800.470 kb on - strand at 800.470 kb on - strand at 800.481 kb on + strand at 800.481 kb on + strand at 800.481 kb on + strand at 800.501 kb on + strand, within SMa1452 at 800.502 kb on - strand, within SMa1452 at 800.502 kb on - strand, within SMa1452 at 800.593 kb on - strand, within SMa1452 at 800.733 kb on + strand, within SMa1452 at 800.734 kb on - strand, within SMa1452 at 801.153 kb on + strand at 801.225 kb on - strand at 801.229 kb on + strand at 801.229 kb on + strand at 801.230 kb on - strand at 801.230 kb on - strand at 801.437 kb on + strand, within SMa1454 at 801.438 kb on - strand, within SMa1454 at 801.594 kb on + strand, within SMa1454 at 801.595 kb on - strand, within SMa1454 at 801.696 kb on - strand, within SMa1454 at 801.700 kb on + strand, within SMa1454 at 801.700 kb on + strand, within SMa1454 at 801.876 kb on - strand, within SMa1454 at 801.876 kb on - strand, within SMa1454 at 801.943 kb on + strand, within SMa1454 at 801.944 kb on - strand, within SMa1454 at 801.988 kb on - strand, within SMa1454 at 801.988 kb on - strand, within SMa1454 at 802.006 kb on + strand, within SMa1454 at 802.007 kb on - strand, within SMa1454 at 802.007 kb on - strand, within SMa1454
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 799,841 + SMa1450 0.54 +0.5 799,841 + SMa1450 0.54 +0.1 799,842 - SMa1450 0.54 -0.5 799,842 - SMa1450 0.54 -0.1 799,872 - SMa1450 0.57 -2.0 799,872 - SMa1450 0.57 +2.1 799,922 + SMa1450 0.61 +0.5 800,009 + SMa1450 0.68 -0.9 800,469 + +1.3 800,469 + +0.4 800,469 + -0.6 800,470 - +1.2 800,470 - +0.6 800,470 - -0.3 800,481 + -1.3 800,481 + +0.9 800,481 + +0.4 800,501 + SMa1452 0.12 -2.3 800,502 - SMa1452 0.12 -0.7 800,502 - SMa1452 0.12 -1.2 800,593 - SMa1452 0.24 -2.8 800,733 + SMa1452 0.42 -0.4 800,734 - SMa1452 0.42 -0.4 801,153 + +0.4 801,225 - -1.1 801,229 + -1.5 801,229 + -0.2 801,230 - -1.4 801,230 - +0.5 801,437 + SMa1454 0.13 -0.3 801,438 - SMa1454 0.13 +1.1 801,594 + SMa1454 0.28 +0.5 801,595 - SMa1454 0.28 +1.5 801,696 - SMa1454 0.38 +0.4 801,700 + SMa1454 0.38 -0.8 801,700 + SMa1454 0.38 +0.4 801,876 - SMa1454 0.55 -0.8 801,876 - SMa1454 0.55 +0.5 801,943 + SMa1454 0.62 -0.1 801,944 - SMa1454 0.62 -0.5 801,988 - SMa1454 0.66 -0.3 801,988 - SMa1454 0.66 +0.1 802,006 + SMa1454 0.68 +0.2 802,007 - SMa1454 0.68 -1.1 802,007 - SMa1454 0.68 -0.4
Or see this region's nucleotide sequence