Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1353 and SMa1354 are separated by 313 nucleotides SMa1354 and SMa1355 are separated by 322 nucleotides
SMa1353: SMa1353 - epimerase, at 740,057 to 740,944
SMa1353
SMa1354: SMa1354 - Isomerase, at 741,258 to 742,109
SMa1354
SMa1355: SMa1355 - hypothetical protein, at 742,432 to 743,280
SMa1355
Position (kb) 741
742
743 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 740.391 kb on + strand, within SMa1353 at 740.391 kb on + strand, within SMa1353 at 740.391 kb on + strand, within SMa1353 at 740.391 kb on + strand, within SMa1353 at 740.391 kb on + strand, within SMa1353 at 740.391 kb on + strand, within SMa1353 at 740.392 kb on - strand, within SMa1353 at 740.392 kb on - strand, within SMa1353 at 740.392 kb on - strand, within SMa1353 at 740.392 kb on - strand, within SMa1353 at 740.392 kb on - strand, within SMa1353 at 740.392 kb on - strand, within SMa1353 at 740.392 kb on - strand, within SMa1353 at 740.392 kb on - strand, within SMa1353 at 740.499 kb on + strand, within SMa1353 at 740.645 kb on + strand, within SMa1353 at 740.646 kb on - strand, within SMa1353 at 740.687 kb on + strand, within SMa1353 at 740.688 kb on - strand, within SMa1353 at 740.688 kb on - strand, within SMa1353 at 740.689 kb on + strand, within SMa1353 at 740.690 kb on - strand, within SMa1353 at 740.703 kb on + strand, within SMa1353 at 740.704 kb on - strand, within SMa1353 at 740.704 kb on - strand, within SMa1353 at 740.874 kb on + strand at 740.945 kb on - strand at 740.967 kb on - strand at 740.967 kb on - strand at 741.067 kb on + strand at 741.131 kb on + strand at 741.269 kb on + strand at 741.269 kb on + strand at 741.269 kb on + strand at 741.421 kb on + strand, within SMa1354 at 741.422 kb on - strand, within SMa1354 at 741.422 kb on - strand, within SMa1354 at 741.513 kb on + strand, within SMa1354 at 741.514 kb on - strand, within SMa1354 at 741.514 kb on - strand, within SMa1354 at 741.514 kb on - strand, within SMa1354 at 741.582 kb on - strand, within SMa1354 at 741.587 kb on - strand, within SMa1354 at 741.747 kb on - strand, within SMa1354 at 741.755 kb on + strand, within SMa1354 at 741.755 kb on + strand, within SMa1354 at 741.755 kb on + strand, within SMa1354 at 741.755 kb on + strand, within SMa1354 at 741.792 kb on + strand, within SMa1354 at 741.792 kb on + strand, within SMa1354 at 741.792 kb on + strand, within SMa1354 at 741.792 kb on + strand, within SMa1354 at 741.792 kb on + strand, within SMa1354 at 741.792 kb on + strand, within SMa1354 at 741.793 kb on - strand, within SMa1354 at 741.793 kb on - strand, within SMa1354 at 741.793 kb on - strand, within SMa1354 at 741.958 kb on - strand, within SMa1354 at 741.958 kb on - strand, within SMa1354 at 742.152 kb on + strand at 742.246 kb on + strand at 742.246 kb on + strand at 742.321 kb on + strand at 742.328 kb on - strand at 742.329 kb on - strand at 742.359 kb on - strand at 742.387 kb on + strand at 742.388 kb on - strand at 742.404 kb on - strand at 742.543 kb on - strand, within SMa1355 at 742.544 kb on + strand at 742.544 kb on + strand, within SMa1355 at 742.545 kb on - strand, within SMa1355 at 742.545 kb on - strand, within SMa1355 at 742.545 kb on - strand, within SMa1355 at 742.545 kb on - strand, within SMa1355 at 742.545 kb on - strand, within SMa1355 at 742.583 kb on + strand, within SMa1355 at 742.584 kb on - strand, within SMa1355 at 742.584 kb on - strand, within SMa1355 at 742.584 kb on - strand, within SMa1355 at 742.727 kb on + strand, within SMa1355 at 742.743 kb on + strand, within SMa1355 at 742.743 kb on + strand, within SMa1355 at 742.744 kb on - strand, within SMa1355 at 742.937 kb on - strand, within SMa1355 at 742.955 kb on + strand, within SMa1355 at 742.956 kb on - strand, within SMa1355 at 742.973 kb on + strand, within SMa1355 at 742.974 kb on - strand, within SMa1355 at 743.044 kb on - strand, within SMa1355
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 740,391 + SMa1353 0.38 -1.3 740,391 + SMa1353 0.38 +0.3 740,391 + SMa1353 0.38 +3.1 740,391 + SMa1353 0.38 -0.5 740,391 + SMa1353 0.38 +0.4 740,391 + SMa1353 0.38 -0.0 740,392 - SMa1353 0.38 -0.3 740,392 - SMa1353 0.38 +0.7 740,392 - SMa1353 0.38 +0.2 740,392 - SMa1353 0.38 +0.2 740,392 - SMa1353 0.38 +0.2 740,392 - SMa1353 0.38 -0.1 740,392 - SMa1353 0.38 -0.3 740,392 - SMa1353 0.38 -0.6 740,499 + SMa1353 0.50 -0.3 740,645 + SMa1353 0.66 -1.4 740,646 - SMa1353 0.66 +0.7 740,687 + SMa1353 0.71 -0.1 740,688 - SMa1353 0.71 -1.6 740,688 - SMa1353 0.71 +0.4 740,689 + SMa1353 0.71 -0.5 740,690 - SMa1353 0.71 -0.8 740,703 + SMa1353 0.73 -1.6 740,704 - SMa1353 0.73 -1.6 740,704 - SMa1353 0.73 -1.0 740,874 + +1.6 740,945 - +0.2 740,967 - +0.9 740,967 - -0.4 741,067 + -1.5 741,131 + +0.1 741,269 + +0.9 741,269 + -0.9 741,269 + -0.9 741,421 + SMa1354 0.19 -0.3 741,422 - SMa1354 0.19 -2.4 741,422 - SMa1354 0.19 +1.7 741,513 + SMa1354 0.30 -0.8 741,514 - SMa1354 0.30 -1.3 741,514 - SMa1354 0.30 -0.1 741,514 - SMa1354 0.30 -0.9 741,582 - SMa1354 0.38 -0.2 741,587 - SMa1354 0.39 -0.8 741,747 - SMa1354 0.57 -0.1 741,755 + SMa1354 0.58 -0.1 741,755 + SMa1354 0.58 +2.5 741,755 + SMa1354 0.58 +0.1 741,755 + SMa1354 0.58 -0.8 741,792 + SMa1354 0.63 -0.8 741,792 + SMa1354 0.63 +0.0 741,792 + SMa1354 0.63 -1.0 741,792 + SMa1354 0.63 -0.3 741,792 + SMa1354 0.63 -1.9 741,792 + SMa1354 0.63 -0.4 741,793 - SMa1354 0.63 +1.5 741,793 - SMa1354 0.63 -1.0 741,793 - SMa1354 0.63 -0.6 741,958 - SMa1354 0.82 -1.8 741,958 - SMa1354 0.82 +1.3 742,152 + +0.4 742,246 + +1.7 742,246 + -0.3 742,321 + -2.1 742,328 - +0.1 742,329 - +0.0 742,359 - +0.5 742,387 + -1.1 742,388 - +0.3 742,404 - -0.5 742,543 - SMa1355 0.13 +1.5 742,544 + +1.5 742,544 + SMa1355 0.13 +0.6 742,545 - SMa1355 0.13 +2.0 742,545 - SMa1355 0.13 +0.2 742,545 - SMa1355 0.13 -0.4 742,545 - SMa1355 0.13 -0.2 742,545 - SMa1355 0.13 +0.3 742,583 + SMa1355 0.18 +0.0 742,584 - SMa1355 0.18 -0.1 742,584 - SMa1355 0.18 -1.1 742,584 - SMa1355 0.18 +1.8 742,727 + SMa1355 0.35 -0.2 742,743 + SMa1355 0.37 -1.7 742,743 + SMa1355 0.37 +0.8 742,744 - SMa1355 0.37 -1.9 742,937 - SMa1355 0.59 +0.3 742,955 + SMa1355 0.62 +1.0 742,956 - SMa1355 0.62 -0.6 742,973 + SMa1355 0.64 +0.6 742,974 - SMa1355 0.64 -0.2 743,044 - SMa1355 0.72 +0.2
Or see this region's nucleotide sequence