Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21561

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21560 and SM_b21561 are separated by 4 nucleotidesSM_b21561 and SM_b21562 are separated by 36 nucleotidesSM_b21562 and SM_b21563 are separated by 130 nucleotides SM_b21560: SM_b21560 - two component sensor histidine kinase, at 1,100,294 to 1,101,556 _b21560 SM_b21561: SM_b21561 - two component response regulator protein, at 1,101,561 to 1,102,259 _b21561 SM_b21562: SM_b21562 - hypothetical protein, at 1,102,296 to 1,102,847 _b21562 SM_b21563: SM_b21563 - transcriptional regulator, at 1,102,978 to 1,103,343 _b21563 Position (kb) 1101 1102 1103Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1100.675 kb on + strand, within SM_b21560at 1100.675 kb on + strand, within SM_b21560at 1101.103 kb on - strand, within SM_b21560at 1101.324 kb on + strand, within SM_b21560at 1101.325 kb on - strand, within SM_b21560at 1101.325 kb on - strand, within SM_b21560at 1101.325 kb on - strand, within SM_b21560at 1101.562 kb on + strandat 1101.569 kb on + strandat 1101.581 kb on - strandat 1101.614 kb on + strandat 1101.806 kb on + strand, within SM_b21561at 1101.806 kb on + strand, within SM_b21561at 1101.807 kb on - strand, within SM_b21561at 1101.807 kb on - strand, within SM_b21561at 1101.964 kb on + strand, within SM_b21561at 1101.965 kb on - strand, within SM_b21561at 1102.170 kb on - strand, within SM_b21561at 1102.181 kb on - strand, within SM_b21561at 1102.199 kb on - strandat 1102.293 kb on + strandat 1102.298 kb on - strandat 1102.631 kb on + strand, within SM_b21562at 1102.632 kb on - strand, within SM_b21562at 1102.649 kb on + strand, within SM_b21562at 1102.649 kb on + strand, within SM_b21562at 1102.650 kb on - strand, within SM_b21562at 1102.650 kb on - strand, within SM_b21562at 1102.930 kb on - strandat 1102.939 kb on + strandat 1102.955 kb on + strandat 1102.979 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,100,675 + SM_b21560 0.30 +0.6
1,100,675 + SM_b21560 0.30 +0.9
1,101,103 - SM_b21560 0.64 -0.0
1,101,324 + SM_b21560 0.82 +0.8
1,101,325 - SM_b21560 0.82 -0.3
1,101,325 - SM_b21560 0.82 -0.7
1,101,325 - SM_b21560 0.82 +3.7
1,101,562 + -1.1
1,101,569 + -0.7
1,101,581 - -0.4
1,101,614 + -0.3
1,101,806 + SM_b21561 0.35 -1.2
1,101,806 + SM_b21561 0.35 +1.6
1,101,807 - SM_b21561 0.35 -0.0
1,101,807 - SM_b21561 0.35 +0.1
1,101,964 + SM_b21561 0.58 -0.8
1,101,965 - SM_b21561 0.58 -0.9
1,102,170 - SM_b21561 0.87 -2.7
1,102,181 - SM_b21561 0.89 -0.6
1,102,199 - -0.0
1,102,293 + -1.5
1,102,298 - -1.8
1,102,631 + SM_b21562 0.61 -0.6
1,102,632 - SM_b21562 0.61 -0.3
1,102,649 + SM_b21562 0.64 -0.7
1,102,649 + SM_b21562 0.64 +0.4
1,102,650 - SM_b21562 0.64 +2.1
1,102,650 - SM_b21562 0.64 +0.7
1,102,930 - +0.1
1,102,939 + -1.2
1,102,955 + -0.7
1,102,979 + -0.5

Or see this region's nucleotide sequence